Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq876 96.9 2e-15 seq258 96.9 2e-15 seq202 93.3 3e-14 >seq876 Length=1913211 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || ||||||||||| || || || || |||||||| || || | Sbjct 530406 AATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATTACTCTCGACGTGGAGAGTTC 530465 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | ||||| | || |||||| |||||||| || | || || || || Sbjct 530466 CGACACCATCGAAATCGTTAAGTCAAAAATCCAGGACAAAGAGGGCATCCCACCGGACCA 530525 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || ||||| ||||| || || |||| || || | ||| ||||| Sbjct 530526 GCAGAGGTTGATTTTCGCCGGAAAACAGCTCGAGGACGGCCGAACCCTCTCCGACTACAA 530585 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 530586 CATCCAGAAAGAGTCGAC 530603 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || || ||||| |||||||| || || || | Sbjct 665708 ATGCAGATATTTGTGAAAACACTTACTGGGAAAACTATCACTCTTGAGGTGGAGAGTTCA 665649 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||| ||| |||||||| || ||||||||||||| Sbjct 665648 GACACAATTGATAACGTGAAGGCAAAGATTCAGGACAAAGAGGGGATACCGCCAGATCAG 665589 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || || ||||| || || || | ||||| | | ||||||||| Sbjct 665588 CAGAGGCTCATCTTCGCTGGAAAACAGCTTGAGGATGGCCGCACCCTTGCGGATTACAAC 665529 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 665528 ATTCAGAAGGAATCCAC 665512 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || ||||| ||||| || || | | Sbjct 666392 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGAGCTCT 666333 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| || || || || || || | || || ||||| Sbjct 666332 GACACCATCGACAACGTAAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCCGGATCAG 666273 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| ||||| || || | || || | | ||||| || Sbjct 666272 CAGAGGCTGATCTTTGCCGGCAAGCAACTCGAGGATGGCCGAACCCTTGCTGATTATAAT 666213 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| |||||||| Sbjct 666212 ATTCAAAAGGAGTCCAC 666196 >seq258 Length=1945713 Score = 96.9 bits (106), Expect = 2e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || || |||||||| ||||| || ||||| || ||||| | ||| Sbjct 1660425 GACAAGGAAGGCATTCCACCTGATCAACAACGTTTGATTTTTGCTGGGAAACAGTTAGAA 1660484 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || || |||| ||||||||||| || || ||||| || | ||||||||||| Sbjct 1660485 GATGGTCGGACCTTAGCAGATTACAACATTCAGAAGGAGTCAACTCTCCATTTAGTTTTG 1660544 Query 23824 AGGTTGCGAGGAGGATCA 23841 ||| | |||| ||| || Sbjct 1660545 AGGCTTAGAGGTGGAACA 1660562 >seq202 Length=4793652 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || ||||||||||| |||||||| | | Sbjct 4328570 ATGCAGATTTTTGTGAAGACCCTAACTGGTAAGACGATCACTCTTGAAGTTGAGAGCTCC 4328629 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||||||||| | || || || || Sbjct 4328630 GACACCATAGACAATGTCAAGGC-CAAGATCCAGGACAAAGAAGGCATTCCTCCGGACCA 4328688 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || || || || || || | ||||| | | ||||| || Sbjct 4328689 GCAGAGGTTAATTTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACACTTGCAGATTATAA 4328748 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 4328749 CATTCAGAAGGAGTCTAC 4328766 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || || || || |||||||| |||||||| | | Sbjct 4328798 ATGCAGATTTTCGTGAAGACGCTTACCGGCAAGACAATCACTCTTGAAGTTGAGAGCTCT 4328857 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || || ||||||||||| | || || || || Sbjct 4328858 GACACCATTGACAATGTCAAGGC-TAAGATACAGGACAAAGAAGGCATCCCTCCGGACCA 4328916 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| || || || || || || | ||||| | | |||||||| Sbjct 4328917 GCAAAGACTTATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAA 4328976 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 4328977 CATTCAGAAGGAATCCAC 4328994 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| ||||| || ||||| || |||||||| | | Sbjct 4329121 ATGCAGATATTTGTGAAAACCCTCACTGGAAAGACAATCACACTTGAAGTTGAGAGCTCC 4329180 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| |||| | ||||| || || || || | || || || || Sbjct 4329181 GACACTATTGACAATGTTAAGGC-TAAAATCCAAGATAAGGAGGGGATTCCACCGGACCA 4329239 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| || || || || || || | ||||| | | || ||||| Sbjct 4329240 GCAGCGCCTCATTTTTGCTGGTAAGCAGCTTGAGGATGGTCGCACCCTTGCGGACTACAA 4329299 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 4329300 TATTCAGAAGGAATCTAC 4329317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337640559428672