Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq36 163 4e-35 seq293 159 5e-34 seq468 122 1e-22 seq403 109 8e-19 >seq36 Length=6822877 Score = 163 bits (180), Expect = 4e-35 Identities = 384/579 (66%), Gaps = 3/579 (1%) Strand=Plus/Plus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||| ||||| || || || ||||| | | ||| | ||||| ||||| ||||| Sbjct 1783602 ACACGCAAAGTCACAGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTGGAAAAAGTGAG 1783661 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 ||| |||||||| || | || || ||||| || || || |||| ||||| ||||| Sbjct 1783662 ACCAGGCATTAGCCCTCTCTTCTTCAGCCAGAAGATGGCGCAGAAACTACCAGAGAAGAA 1783721 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTAT 48319 ||||| || ||| |||||||| || || |||| | || | | || || Sbjct 1783722 GATGCCCTCAACGCAAGCAAATGCAAGAATTCGCTCTGCAAAAGAATCGGAGGCGTCGAT 1783781 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 ||| || | ||||| | ||||| || || || | || || ||||||| || Sbjct 1783782 CCAGCGGAGAGCCCACTGTGCCTTGCGGGCGACGCAGGGAACGGTCTCGATAGCATGGAA 1783841 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 ||| ||| || | ||||| | ||| || || | | || || ||||| || Sbjct 1783842 GAGGTGCGATTTCTCTGCGGAGTCTTTGATGTAGGTTTCGAGAAGCAGGCTGTACATCTC 1783901 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499 |||||| || ||||| || || ||||||||||| || ||| | ||| || | || ||| Sbjct 1783902 GGAGTGGATGTTTTCGATGGCGATCTGAAATCCATAGAAAGCGCGCGCCTCCGGGAGCTG 1783961 Query 48500 TACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAA 48559 ||||||| || || |||| | ||||| || ||||| || ||| || || Sbjct 1783962 TACCTCCCGCATGAAGCGGCCAGCGAGGTTCTCTAGAACGATTCCGTCGGAAGCGGCGAA 1784021 Query 48560 AAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAG---TTTATTCCAGTC 48616 || || | || || | | |||| ||||| ||| || || || |||||||| Sbjct 1784022 GAAAGCGAGAACGTGGGTTACGAAATGCCGTTCGTCGGAGGTGAGGGATTCATTCCAGTG 1784081 Query 48617 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTT 48676 || ||||| || | ||| |||||||| |||||||| || || || || ||||| || Sbjct 1784082 GCGGAGATCTTGGGACAGATCAACTTCTTCTGCTGTCCAGAAAGAGGCTTCGGCTTTCTT 1784141 Query 48677 ATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 ||||| | ||| || | | ||| |||| || || || Sbjct 1784142 GTACATCTCCCAGATCTGAGGGTAGCGGATCGGAAACAT 1784180 >seq293 Length=413263 Score = 159 bits (176), Expect = 5e-34 Identities = 571/881 (65%), Gaps = 25/881 (3%) Strand=Plus/Minus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 || ||||| || || || | ||||| || |||||||| || || | || || || | Sbjct 227388 TTCTGATACTCCCCAACCCTCTTCTCAAAGAAATTAGTCTTACCCTGCAGCGAGATGAGT 227329 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| ||||||||||||| | || ||| || || | | | || | || || Sbjct 227328 TCCATCCAATCAAATGGATTCGATACACCATACATCTTGTCATAGCCCAGAGCTCCAACA 227269 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 || | |||||| |||||||| ||||| | |||| | || ||||| || | ||| Sbjct 227268 AGCCGATCTGCCACGAATTCAATATAGCGGCTCATTAGATCTGCGTTCATCCCCACAAGA 227209 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 || || || || || ||| || | ||| ||| |||||||| | | ||| Sbjct 227208 GCGCAGGGGAGTGCATCACAAACAAATTCCTTTTCAATATCTACAGCATCGGCAACAATC 227149 Query 48090 GATGTTACCGTTTCCTC----ACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145 ||| | ||||| | | || ||| || | | || ||| | || || Sbjct 227148 TCCCGAACCCTCTCCTCCGAAATCTTGTTGAT----CAGAAGGCTATACAGAAGGCAAGC 227093 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 ||| || || || || || || || | | || | ||||||||||| |||||||| || Sbjct 227092 AAAGTCGCAGTGGAGTCCCTCGTCACGAGAGATGAGCTCGTTAGAAAAAGTGAGACCTGG 227033 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATATGC 48264 ||| | || || || |||||||| || | || ||| ||| | || || ||||| || | Sbjct 227032 CATCAAACCGCGCTTCTTGAGCCAGAAGA-TGGCGCAGAAGCTGCCGGAGAAGAAAATAC 226974 Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT--ATCCA 48322 |||| ||| |||||| ||| || || | ||| | || || | | | || ||||| Sbjct 226973 CTTCGACGCACGCAAAAGCGAGAA-TC-CGCTCAGCAAATGATTCAGAGGCGTCAATCCA 226916 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 || ||||||| | |||||| || || || | ||||| || || ||| || Sbjct 226915 GCGCAGTGCCCACTGAGCCTTACGGGCGACGCAGGGTACGGTTTCGATGGCGCGAAAAAG 226856 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 | | |||||| || || || | ||| || || | | |||||||||||| ||||| Sbjct 226855 ATTGGATTTTTCGGTGGAGTCCTTGATGTAGGTCTCGAGGAGAAGACTATACATCTCGGA 226796 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 |||||| ||||| || || ||||| || || || ||| | ||| || | | || || Sbjct 226795 GTGAATGTTTTCGATGGCGATCTGGAAGCCATAGAAAGCGCGCGCCTCCGGAAGTTGAAC 226736 Query 48503 CTC-CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561 ||| || | || ||| | || | ||||| || || |||||| ||| || || | Sbjct 226735 CTCTCGCA-TGAAGCGTCCGGCGAGGTTCTCCAGCACGATACCATCAGAAGCGGCGAAGA 226677 Query 48562 ATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA--GTTTATTCCAGTCATT 48619 | || | || | | ||||| | |||| || || | || | ||| |||| Sbjct 226676 AGGCCAGGACGTAGGTGATAAAGTGGCGCTCGTCAGAGGTGAGGGTGTGATCC---CATT 226620 Query 48620 G----ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 | | |||| ||| | ||| || ||||| || ||||| || || ||||||||||| | Sbjct 226619 GCCGAACGTCTTGTGAGAGATCGACCTCTTCCGCAGTCCAGAAAGAGGCCTCTGCTTTCT 226560 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716 | ||||| | ||| || | | ||| |||| ||||| ||| Sbjct 226559 TGTACATCTCCCAAATCTGAGGGTAGCGGATCGGGAACATA 226519 >seq468 Length=902046 Score = 122 bits (134), Expect = 1e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||| | ||||| ||||||| |||| |||| | |||||| |||| ||| || Sbjct 790169 ACCCCCTTGATCAACATATCGAGCGGTGTCATTAAAAACACGCAACATGGGAACAATGCC 790110 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||||||||| |||||| |||||||||||| | || ||||| ||| || || Sbjct 790109 ATTCGATGTTCCATTCGTTCCACGAATATAACTTCCGGTGGCACGAATGTTATGAACAGA 790050 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || ||| ||| | ||||| |||| |||||| || || Sbjct 790049 GACACCAATTCCTCCAGCAGACTTGCTTATAACTGCGCACTCCTTCAGTGTATCATATAT 789990 Query 78338 ACCCTCTATACTGTCATCCATCATG 78362 || || || || ||||| ||||| Sbjct 789989 CCCATCAATGCTATCATCTTTCATG 789965 Score = 100 bits (110), Expect = 4e-16 Identities = 127/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||| | ||||||| ||| || | |||| |||||||||||| |||| |||| || Sbjct 791675 CTCTTTCTCATATTTTAGATACAGTCTCACAAAGTCATCTCCCCAACAATCAGCCAAACC 791616 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 ||| || |||||||| | |||||||| || ||| | | || |||| || ||| | Sbjct 791615 AGGAGCCTCGTTTGGGCAGAATAATGACCATTCCTCAT-TACTTTGGACTCTTTCCATGA 791557 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 | ||||| || |||||||| ||| ||| ||||||| || ||||||||| || Sbjct 791556 AAAGATCGGGAATCCATAGGGCATAAAAAAGATCTCTGGCTCTATGTTCCTC 791505 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| |||||||| || | ||| ||||| || || ||||||||| | ||| | | || Sbjct 789176 AGTGCCTGCATTGAACAGTGTAGGAGAAGCGTGAGTAAACCATCGCTGAGACATCAAATG 789117 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| || || || | || || || ||||| || || || || | |||||| Sbjct 789116 GTATGTTCTGATTGCAGACACAATATCATCTTTGTGAATCCCAACAGCAACTCTCATCAA 789057 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| || ||||| ||||| | ||| | | |||||| | ||| ||| || | Sbjct 789056 CATGTGTTGAGGCCTTTCGATGACCTTCCCAGAAACTTTCAAGAGGTAGGATCGCTCGAG 788997 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| ||||||||||| | ||| ||| || || || || ||||| Sbjct 788996 GGTTTTGAAACCAAAATAATCGTAGTCAAAATCCCTGTCATATATAAT 788949 >seq403 Length=1478721 Score = 109 bits (120), Expect = 8e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| |||||||| ||||| || ||||| ||||| || ||||| || | |||| Sbjct 384297 AGTGCCTGCATTGAATAAGGTAGGAGAAGCATGAGTGAACCACCGCAGTGACATCAGATG 384238 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 ||| |||| ||| || || || || || |||| |||||| |||| || || | ||||| Sbjct 384237 GTAGGTTTTAATGGCAGAATCAATATCTTCATT-ATGAATCCCTATAGCAACTCTCATCA 384179 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 |||||||||| || ||||| ||| || | || ||| || | || || | || | Sbjct 384178 ACATATGCTGCGGCCTTTCCACCACTTTCCCAGATACTTTTAAAAGATAAGACCTCTCGA 384119 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||||||||||||| || | || ||||||||| || ||||| || Sbjct 384118 GAGTTTTAAAACCAAAGTAATCATAATCAAAGTCTCTATCATAAATGAT 384070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693890909877760