Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq146607 91.5 2e-13 seq122030 86.0 7e-12 seq39102 86.0 7e-12 seq37047 86.0 7e-12 >seq146607 Length=192245 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||| || ||||| || | |||||||||||||| ||||||||| | ||| | | || Sbjct 46419 AGTGCCTGCATTGAACAGTGTAGGAGAAGCGTGAGTAAACCATCGCTGAGACATCAAATG 46360 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 ||| || ||| || || | ||||| || ||||| || || || || | ||| || Sbjct 46359 GTATGTTCTGATTGCAGACACAATATCATCTTTGTGAATCCCAACAGCAACTCTCATCAA 46300 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||| ||||| ||||| | || ||| | ||||| | ||||||| || | Sbjct 46299 CATGTGTTGAGGCCTTTCGATGACCTTCCCAGAAACTTTCAAGAGGTAGGATCGCTCGAG 46240 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| ||||||||||| | ||| ||| || | || || ||||| Sbjct 46239 GGTTTTGAAACCAAAATAATCGTAGTCAAAATCCCTGTCATATATAAT 46192 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||| || ||||| || | |||||||||||||| ||||||||| | ||| | | || Sbjct 51486 AGTGCCTGCATTGAACAGTGTAGGAGAAGCGTGAGTAAACCATCGCTGAGACATCAAATG 51427 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 ||| || ||| || || | ||||| || ||||| || || | || | ||| || Sbjct 51426 GTATGTTCTGATTGCAGACACAATATCATCTTTGTGAATCCCAACAGAAACTCTCATCAA 51367 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||| ||||| ||||| | || ||| | ||||| | ||||||| ||| | Sbjct 51366 CATGTGTTGAGGCCTTTCGATGACCTTCCCAGAAACTTTCAAGAGGTAGGATCGTTCGAG 51307 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| ||||||||||| | ||| ||| || | || || ||||| Sbjct 51306 GGTTTTGAAACCAAAATAATCGTAGTCAAAATCCCTGTCATATATAAT 51259 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/171 (71%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 53925 CTCTTTCGTATAGTGTA--TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 ||||||| ||| | || |||| || ||||||| ||||||||| || |||| || Sbjct 54025 CTCTTTCTCATATTTTAGATACAGTCTCACAAACTCATCTCCCCAACAATCAGCCAAACC 53966 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 |||| || | || || | || ||||| || | | | || |||| || ||| || Sbjct 53965 AGGAGCCTCGTTTGGGCAGAATAATGACCATTCCTCATTACTCTGGACTCTTTCCATGAA 53906 Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093 ||||| |||||||| || || ||| |||||||||| |||||||||||| Sbjct 53905 AAGATCGGGAATCCATAGGGCATAAAAAAGATCTCTGGCTCTATGTTCCTC 53855 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/171 (71%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 53925 CTCTTTCGTATAGTGTA--TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 ||||||| ||| | || |||| || ||||||| ||||||||| || |||| || Sbjct 55607 CTCTTTCTCATATTTTAGATACAGTCTCACAAACTCATCTCCCCAACAATCAGCCAAACC 55548 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 |||| || | || || | || ||||| || | | | || |||| || ||| || Sbjct 55547 AGGAGCCTCGTTTGGGCAGAATAATGACCATTCCTCATTACTCTGGACTCTTTCCATGAA 55488 Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093 ||||| |||||||| || || ||| |||||||||| |||||||||||| Sbjct 55487 AAGATCGGGAATCCATAGGGCATAAAAAAGATCTCTGGCTCTATGTTCCTC 55437 >seq122030 Length=308131 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||| || ||||| ||||||||||||||||| || || ||||| || | |||| Sbjct 210806 AGTGCCTGCATTGAATAAGGTAGGAGAAGCATGAGTGAACCACCGCAGTGACATCAGATG 210865 Query 54484 GTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 54542 ||| || | || || || || ||||| |||| |||||| |||| || || | ||| | Sbjct 210866 GTAGGTTTTAATGGCAGAATCAATATCTTCATT-ATGAATCCCTATAGCAACTCTCATCA 210924 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 |||| ||||| || ||||| || | || || ||| | | || || |||| | Sbjct 210925 ACATATGCTGCGGCCTTTCCACCACTTTCCCAGATACTTTTAAAAGATAAGACCTTTCGA 210984 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||||||||||||| || | || ||||||| || ||||| || Sbjct 210985 GAGTTTTAAAACCAAAGTAATCATAATCGAAGTCTCTATCATAAATGAT 211033 >seq39102 Length=2222 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||| || ||||| ||||||||||||||||| || || ||||| || | |||| Sbjct 645 AGTGCCTGCATTGAATAAGGTAGGAGAAGCATGAGTGAACCACCGCAGTGACATCAGATG 586 Query 54484 GTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 54542 ||| || | || || || || ||||| |||| |||||| |||| || || | ||| | Sbjct 585 GTAGGTTTTAATGGCAGAATCAATATCTTCATT-ATGAATCCCTATAGCAACTCTCATCA 527 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 |||| ||||| || ||||| || | || || ||| | | || || | || | Sbjct 526 ACATATGCTGCGGCCTTTCCACCACTTTCCCAGATACTTTTAAAAGATAAGACCTCTCGA 467 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||||||||||||| || | || |||||||| || ||||| || Sbjct 466 GAGTTTTAAAACCAAAGTAATCATAATCAAAGTCTCTATCATAAATGAT 418 >seq37047 Length=1246 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/171 (71%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 53925 CTCTTTCGTATAGTGTA--TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 ||||||| ||| | || |||| || ||||||| ||||||||| || |||| || Sbjct 1168 CTCTTTCTCATATTTTAGATACAGTCTCACAAACTCATCTCCCCAACAATCAGCCAAACC 1109 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 |||| || | || || | || ||||| || | | | || |||| || ||| || Sbjct 1108 AGGAGCCTCGTTTGGGCAGAATAATGACCATTCCTCATTACTCTGGACTCTTTCCATGAA 1049 Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093 ||||| |||||||| || || ||| |||||||||| |||||||||||| Sbjct 1048 AAGATCGGGAATCCATAGGGCATAAAAAAGATCTCTGGCTCTATGTTCCTC 998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592614687713520