Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq142522 107 3e-18 seq44588 107 3e-18 seq127156 89.7 8e-13 >seq142522 Length=12496 Score = 107 bits (118), Expect = 3e-18 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || ||||| || |||||||||||||| | | |||||||| || ||||| ||| Sbjct 3678 CAGGACAAGGAAGGCATTCCACCTGATCAACAGCGTTTGATTTTTGCTGGGAAACAGTTA 3737 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| |||| || |||| |||||| || ||||| || || |||||| | ||||| ||| Sbjct 3738 GAAGATGGTCGGACCTTAGCAGATTACAACATTCAGAAGGAGTCAACTCTCCATTTAGTT 3797 Query 124749 TT-ACGTTTACGAGGTGG 124765 || | | ||| ||||||| Sbjct 3798 TTGAGGCTTA-GAGGTGG 3814 >seq44588 Length=1198 Score = 107 bits (118), Expect = 3e-18 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || ||||| || |||||||||||||| | | |||||||| || ||||| ||| Sbjct 626 CAGGACAAGGAAGGCATTCCACCTGATCAACAGCGTTTGATTTTTGCTGGGAAACAGTTA 567 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| |||| || |||| |||||| || ||||| || || |||||| | ||||| ||| Sbjct 566 GAAGATGGTCGGACCTTAGCAGATTACAACATTCAGAAGGAGTCAACTCTCCATTTAGTT 507 Query 124749 TT-ACGTTTACGAGGTGG 124765 || | | ||| ||||||| Sbjct 506 TTGAGGCTTA-GAGGTGG 490 >seq127156 Length=393785 Score = 89.7 bits (98), Expect = 8e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | || || || || || |||||||| || | ||| | || ||| Sbjct 285673 ATGCAGATATTTGTGAAAACTCTTACTGGAAAAACTATTACCTTGGAGGTGGAGAGCTCG 285732 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| || | || ||| || ||||| || ||||| || ||||| || || Sbjct 285733 -GACACAATTGACAACGTGAAGGCGAAGATCCAAGACAAGGAAGGGATTCCACCGGACCA 285791 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| ||||| || || || | |||||| |||| || | | || ||||| Sbjct 285792 GCAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGTCGCACCCTTGCGGACTATAA 285851 Query 124718 TATTCAAAAAGAATCAAC 124735 |||||| || || || || Sbjct 285852 TATTCAGAAGGAGTCCAC 285869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754047556163200