Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq142522 91.5 2e-13 seq44588 91.5 2e-13 seq98543 89.7 8e-13 seq44530 86.0 9e-12 >seq142522 Length=12496 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||||||||| || || || ||||| | ||| || || || || || |||||| Sbjct 3817 GTTCCACCTCTAAGCCTCAAAACTAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCT 3758 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | || | | ||| ||||| ||||| |||||||||||||| | || ||||| || Sbjct 3757 GCTAAGGTCCGACCATCTTCTAACTGTTTCCCAGCAAAAATCAAACGCTGTTGATCAGGT 3698 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 3697 GGAATGCCTTCCTTGTCCTG 3678 >seq44588 Length=1198 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||||||||| || || || ||||| | ||| || || || || || |||||| Sbjct 487 GTTCCACCTCTAAGCCTCAAAACTAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCT 546 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | || | | ||| ||||| ||||| |||||||||||||| | || ||||| || Sbjct 547 GCTAAGGTCCGACCATCTTCTAACTGTTTCCCAGCAAAAATCAAACGCTGTTGATCAGGT 606 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 607 GGAATGCCTTCCTTGTCCTG 626 >seq98543 Length=260802 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || || || |||| || || | ||| | ||||| || ||| || || |||||||||| Sbjct 115852 CCTCCCCTGAGTCGCAACACAAGATGGAGGGTAGACTCCTTTTGA-ATGTTATAATCTGC 115794 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | || || || | || || ||||||||||| || |||||||| |||||||| Sbjct 115793 AAGGGTGCGGCCGTCCTCAAGCTGCTTCCCAGCAAAAATTAACCTTTGCTGGTCCGGAGG 115734 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| |||||||| || || Sbjct 115733 AATGCCTTCTTTGTCCTG 115716 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || || |||| || || | ||| | ||||| || || || |||||||||| | Sbjct 23967 CCTCCCCTGAGTCGCAACACAAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCTGCA 23908 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| || | || || ||||||||||| || || ||||| ||||||||| Sbjct 23907 AGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAAATTAACCTCTGCTGGTCCGGAGGA 23848 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| || || Sbjct 23847 ATGCCTTCTTTGTCCTG 23831 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || || |||| || || | ||| | ||||| || || || |||||||||| | Sbjct 26734 CCTCCCCTGAGTCGCAACACAAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCTGCA 26675 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| || | || || ||||||||||| || || ||||| ||||||||| Sbjct 26674 AGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAAATTAACCTCTGCTGGTCCGGAGGA 26615 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| || || Sbjct 26614 ATGCCTTCTTTGTCCTG 26598 >seq44530 Length=310530 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| ||||| | | || | ||||| |||||||| || || |||||||| | | Sbjct 30776 CCACCCCTAAGACGAAGCACAAGATGTAGGGTAGATTCCTTCTGGATGTTATAATCAGCA 30835 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| || | |||||||||||||| |||| |||||||| ||||| ||| Sbjct 30836 AGGGTACGGCCATCCTCAAGCTGTTTTCCAGCAAATATCAGCCTTTGCTGGTCCGGGGGA 30895 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || || || || Sbjct 30896 ATGCCCTCCTTGTCCTG 30912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742140197262080