Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq122030 100 4e-16 seq39102 100 4e-16 seq146110 93.3 5e-14 seq146607 89.7 6e-13 >seq122030 Length=308131 Score = 100 bits (110), Expect = 4e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 || ||| || ||||| ||||||||||||||||| || || ||||| || | || Sbjct 210803 AGGAGTGCCTGCATTGAATAAGGTAGGAGAAGCATGAGTGAACCACCGCAGTGACATCAG 210862 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCA 63777 || ||| || | ||| || || || ||||| |||| |||||| |||| || || | || Sbjct 210863 ATGGTAGGTTTTAATGGCAGAATCAATATCTTCATT-ATGAATCCCTATAGCAACTCTCA 210921 Query 63778 TTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63837 | ||||| ||||| || ||||| || | ||| || ||| || | || || ||| Sbjct 210922 TCAACATATGCTGCGGCCTTTCCACCACTTTCCCAGATACTTTTAAAAGATAAGACCTTT 210981 Query 63838 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 | | ||||||||||||||| || | || ||||||| || ||||| || Sbjct 210982 CGAGAGTTTTAAAACCAAAGTAATCATAATCGAAGTCTCTATCATAAATGAT 211033 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | || | ||| || | ||| |||| | | |||||||| | ||| Sbjct 210254 TCCTCCTTGATCAACATACCGAGCAGTATCATTGAAAACCCGTAGCATTGGAACTACACC 210313 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || || | |||||| || || | || || | ||| | |||||||| || ||| || Sbjct 210314 ATTCGAAACACCATTCGTCCCACAAATGTAACTCCCAGTCGCACGAATGTTGTGAATGGA 210373 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| ||||| || || ||| |||| ||||| ||| || || ||||| || Sbjct 210374 GACACCAATTCCGCCAGCAGATTTGCTTATTATAGCGCACTCTTTCAAGGTATCATATAT 210433 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 ||||| ||||||||||| ||||| || || || |||||| Sbjct 210434 TCCTTCAATGCTATCATCTTTCATGCAAATGAGGAAGCAGCTA 210476 >seq39102 Length=2222 Score = 100 bits (110), Expect = 4e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 || ||| || ||||| ||||||||||||||||| || || ||||| || | || Sbjct 648 AGGAGTGCCTGCATTGAATAAGGTAGGAGAAGCATGAGTGAACCACCGCAGTGACATCAG 589 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCA 63777 || ||| || | ||| || || || ||||| |||| |||||| |||| || || | || Sbjct 588 ATGGTAGGTTTTAATGGCAGAATCAATATCTTCATT-ATGAATCCCTATAGCAACTCTCA 530 Query 63778 TTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63837 | ||||| ||||| || ||||| || | ||| || ||| || | || || | | Sbjct 529 TCAACATATGCTGCGGCCTTTCCACCACTTTCCCAGATACTTTTAAAAGATAAGACCTCT 470 Query 63838 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 | | ||||||||||||||| || | || |||||||| || ||||| || Sbjct 469 CGAGAGTTTTAAAACCAAAGTAATCATAATCAAAGTCTCTATCATAAATGAT 418 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | || | ||| || | ||| |||| | | |||||||| | ||| Sbjct 1197 TCCTCCTTGATCAACATACCGAGCAGTATCATTGAAAACCCGTAGCATTGGAACTACACC 1138 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || || | |||||| || || | || || | ||| | |||||||| || ||| || Sbjct 1137 ATTCGAAACACCATTCGTCCCACAAATGTAACTCCCAGTCGCACGAATGTTGTGAATGGA 1078 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| ||||| || || ||| |||| ||||| ||| || || ||||| || Sbjct 1077 GACACCAATTCCGCCAGCAGATTTGCTTATTATAGCGCACTCTTTCAAGGTATCATATAT 1018 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 ||||| ||||||||||| ||||| || || || |||||| Sbjct 1017 TCCTTCAATGCTATCATCTTTCATGCAAATGAGGAAGCAGCTA 975 >seq146110 Length=166024 Score = 93.3 bits (102), Expect = 5e-14 Identities = 216/322 (67%), Gaps = 8/322 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 ||||| || |||||||| || |||||||| | | || | ||||||||||| ||||| Sbjct 154713 CATGCAAAGTCGCAGTGGAGTCCCTCGTCACGAGAGATGAGCTCGTTAGAAAAAGTGAGA 154772 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| | || ||||| || ||||| || |||| ||| ||||| ||||| Sbjct 154773 CCTGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAA 154832 Query 33702 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATG 33757 || ||||| || ||| ||||| || | || | ||| || | | | | |||| Sbjct 154833 ATACCTTCGAC-GCACGCAAAAGCGAGAATCCGCTCAGCAAATGATTCAGAGGCGTCA-- 154889 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | ||||| | ||||| || || || | ||||| ||||| Sbjct 154890 -ATCCAGCGCAGTGCCCACTGAGCCTTACGGGCGACGCAGGGTACGGTTTCGATGGCGCG 154948 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||| |||| | |||||| | || || | || || |||| | |||||||||||| Sbjct 154949 AAAAAGATTGGATTTTTCGGTGGAGTCCTTGATGTAGGTCTCGAGGAGAAGACTATACAT 155008 Query 33878 TTCCGAATGAATGTTTTCAATG 33899 || || ||||||||||| ||| Sbjct 155009 CTCGGAGTGAATGTTTTCGATG 155030 >seq146607 Length=192245 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 || || ||||| | |||| |||||||| |||| |||| | |||||| |||| ||| || Sbjct 47792 CCCCCTTGATCAACATATCGAGCGGTGTCATTAAAAACACGCAACATGGGAACAATGCCA 47733 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542 || || | ||||| || || ||||| | ||| |||||||||| ||| || || Sbjct 47732 TTCGACGTTCCATTCGTTCCACGAATATAACTTCCGGTGGCACGAATGTTATGAACAGAG 47673 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 | ||| ||||| || || || || | |||||| || | || ||||| || Sbjct 47672 ACACCAATTCCTCCAGCAGACTTGCTTATAACTGCGCACTCCTTCAGTGTATCATATATC 47613 Query 63603 CCTTCTATGCTATCATCGATCATG 63626 || || ||||||||||| ||||| Sbjct 47612 CCATCAATGCTATCATCTTTCATG 47589 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 || || ||||| | |||| |||||||| |||| |||| | |||||| |||| ||| || Sbjct 52478 CCCCCTTGATCAACATATCGAGCGGTGTCATTAAAAACACGCAACATGGGAACAATGCCA 52419 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542 || || | ||||| || || ||||| | ||| |||||||||| ||| || || Sbjct 52418 TTCGACGTTCCATTCGTTCCACGAATATAACTTCCGGTGGCACGAATGTTATGAACAGAG 52359 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 | ||| ||||| || || || || | ||| || || | || ||||| || Sbjct 52358 ACACCAATTCCTCCAGCAGACTTGCTTATAACTGCACACTCCTTCAGTGTATCATATATC 52299 Query 63603 CCTTCTATGCTATCATCGATCATG 63626 || || ||||||||||| ||||| Sbjct 52298 CCATCAATGCTATCATCTTTCATG 52275 Score = 82.4 bits (90), Expect = 1e-10 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||| || ||||| || | |||||||||||||| ||||||||| | ||| | | || Sbjct 46419 AGTGCCTGCATTGAACAGTGTAGGAGAAGCGTGAGTAAACCATCGCTGAGACATCAAATG 46360 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || || || || | ||||| || ||||| || || || || | ||| || Sbjct 46359 GTATGTTCTGATTGCAGACACAATATCATCTTTGTGAATCCCAACAGCAACTCTCATCAA 46300 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||| ||||| ||||| | | || | |||||| | ||||||| || | Sbjct 46299 CATGTGTTGAGGCCTTTCGATGACCTTCCCAGAAACTTTCAAGAGGTAGGATCGCTCGAG 46240 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| ||||||||||| | ||| ||| || | || || ||||| Sbjct 46239 GGTTTTGAAACCAAAATAATCGTAGTCAAAATCCCTGTCATATATAAT 46192 Score = 82.4 bits (90), Expect = 1e-10 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||| || ||||| || | |||||||||||||| ||||||||| | ||| | | || Sbjct 51486 AGTGCCTGCATTGAACAGTGTAGGAGAAGCGTGAGTAAACCATCGCTGAGACATCAAATG 51427 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || || || || | ||||| || ||||| || || | || | ||| || Sbjct 51426 GTATGTTCTGATTGCAGACACAATATCATCTTTGTGAATCCCAACAGAAACTCTCATCAA 51367 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||| ||||| ||||| | | || | |||||| | ||||||| ||| | Sbjct 51366 CATGTGTTGAGGCCTTTCGATGACCTTCCCAGAAACTTTCAAGAGGTAGGATCGTTCGAG 51307 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| ||||||||||| | ||| ||| || | || || ||||| Sbjct 51306 GGTTTTGAAACCAAAATAATCGTAGTCAAAATCCCTGTCATATATAAT 51259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628643391684720