Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq98543 100 3e-16 seq93447 98.7 1e-15 seq148200 95.1 1e-14 seq94009 93.3 4e-14 seq127156 89.7 5e-13 seq44530 86.0 6e-12 >seq98543 Length=260802 Score = 100 bits (110), Expect = 3e-16 Identities = 179/255 (70%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 139512 TATTATTGCGACTACCGCGGACATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAG 139571 || ||| | ||||| | | |||| || || || | || | ||| | ||||| |||| Sbjct 28954 TAATATGGGGACTAGCTC--ACATACCCACCACGAAGGCGGAGAACAAGGTGAAGTGTAG 28897 Query 139572 ACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCA 139630 | ||||| || ||||||||||| || |||| || | || ||||||||||| || ||| Sbjct 28896 ATTCTTTCTGGATGTTATAATCAGCCAGCGTGCGTCCA-TCCTCGAGCTGTTTGCCGGCA 28838 Query 139631 TAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAG 139689 |||| ||||| |||||||| ||||| ||||| || || || ||| | || | || | Sbjct 28837 AAGATGAGACGCTGCTGATCAGGAGGAATGCCCTCCTTATC-CTGAATCTTCGCCTTCAC 28779 Query 139690 CTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTT 139749 | || | ||| || | | || ||||||| ||| | ||||| || || | || || Sbjct 28778 GTTATCAATTGTATCAGAGCTTTCTACCTCAAGGGTGATGGTCTTTCCAGTAAGAGTCTT 28719 Query 139750 TACGAATATTTGCAT 139764 || || |||||||| Sbjct 28718 CACAAAGATTTGCAT 28704 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||||||||| || | ||||| ||| || ||||| || ||| Sbjct 23709 GTGGACTCCTTCTGAATGTTATAGTCTGCGAGTGTGCGGCCGTCCTCAAGCTGCTTCCCA 23650 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| |||||||| ||||| ||| || || Sbjct 23649 GCAAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 23590 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| || |||| || | |||||||||||| || || Sbjct 23589 ACATTGTCAATGGTGTCGGAGCTCTCAACTTCAAGAGTGATCGTCTTGCCGGTTAAGGTC 23530 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 23529 TTCACGAAAATCTGCAT 23513 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| |||||| ||||| || ||||||||||| || |||| || || Sbjct 27401 AACAAGGTGAAGCGTAGATTCTTTCTGGATGTTATAATCAGCCAGCGTGCGACCATCCTC 27342 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||| || ||| |||| ||||| |||||||| ||||| ||||| || || || | Sbjct 27341 GAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGAATGCCCTCCTTATC-CT 27283 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | || | | || | ||| || | | || ||||||| ||| | |||| Sbjct 27282 GAATCTTCGCCTTCACGTTATCAATTGTATCAGAGCTTTCTACCTCAAGGGTGATGGTCT 27223 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || | || || || || |||||||| Sbjct 27222 TTCCAGTAAGAGTCTTCACAAAGATTTGCAT 27192 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||||||||| || | ||||| ||| || ||||| || ||| Sbjct 26476 GTGGACTCCTTCTGAATGTTATAGTCTGCGAGTGTGCGGCCGTCCTCAAGCTGCTTCCCA 26417 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | || || || ||||| |||||||| ||||| ||| || || Sbjct 26416 GCAAAGATCAACCTCTGTTGGTCCGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 26357 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| || |||| || | |||||||||||| || || Sbjct 26356 ACATTGTCAATGGTGTCGGAGCTCTCAACTTCAAGAGTGATCGTCTTGCCGGTTAAGGTC 26297 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 26296 TTCACGAAAATCTGCAT 26280 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||| | || ||||| || ||||||||||| || | ||||| || || Sbjct 115607 AACAAGGTGGAGAGTGGACTCCTTCTGAATGTTATAGTCTGCGAGTGTGCGGCCATCCTC 115548 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||| || |||||| |||||| | || || || ||||| |||||||| ||||| Sbjct 115547 GAGCTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCCGGAGGGATGCCTTCCTTGTCTTG 115488 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | ||||||| | ||| || |||| || | |||||| Sbjct 115487 GATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCAAGAGTGATCGTCTT 115428 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| || || || ||||| || ||||| Sbjct 115427 GCCGGTTAAGGTCTTCACGAAAATCTGCAT 115398 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||||||||| | |||| || || ||||| || ||| Sbjct 26932 GTGGACTCCTTTTGAATGTTATAATCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTCCCA 26873 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | |||||| || ||||| |||||||||||||| || || || Sbjct 26872 GCAAAGATAAGTCTTTGCTGGTCCGGAGGGATGCCTTCTTTGTCCTGTATCTTAGCCTTG 26813 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | ||| || |||| || | ||||||||||| | || Sbjct 26812 ACATTGTCAATGGTGTCAGAGCTCTCAACTTCAAGAGTGATTGTCTTGCCGGTAAGGGTC 26753 Query 139748 TTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 26752 TTCACGAAAATCTGCATACCT 26732 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||||||||| | |||| || || ||||| || ||| Sbjct 28444 GTGGACTCCTTTTGAATGTTATAATCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTCCCA 28385 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | |||||| || ||||| |||||||||||||| || || || Sbjct 28384 GCAAAGATAAGTCTTTGCTGGTCCGGAGGGATGCCTTCTTTGTCCTGTATCTTAGCCTTG 28325 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | ||| || |||| || | ||||||||||| | || Sbjct 28324 ACATTGTCAATGGTGTCAGAGCTCTCAACTTCAAGAGTGATTGTCTTGCCGGTAAGGGTC 28265 Query 139748 TTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 28264 TTCACGAAAATCTGCATACCT 28244 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || | || | |||||||| ||||||||||||||||| | |||| | Sbjct 115840 CGCAACACAAGATGGAGGGTAGACTCCTTTTGAATGTTATAATCTGCAAGGGTGCGGCCG 115781 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| | || | | |||||| || ||||| |||||||||||| Sbjct 115780 TCCTCAAGCTGCTTCCCAGCAAAAATTAACCTTTGCTGGTCCGGAGGAATGCCTTCTTTG 115721 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | ||| || |||| || | | Sbjct 115720 TCCTGGATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCAACTTCAAGAGTGATC 115661 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || || | || || || || || |||||| Sbjct 115660 GTCTTACCAGTTAGGGTCTTCACAAAAATCTGCATA 115625 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||||||||| | |||| || || ||||| || ||| Sbjct 116050 GTGGACTCCTTTTGAATGTTATAATCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTCCCA 115991 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | |||||| || ||||| |||||||||||||| || || || Sbjct 115990 GCAAAGATAAGTCTTTGCTGGTCCGGAGGGATGCCTTCTTTGTCCTGTATCTTAGCCTTG 115931 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | ||| || |||| || | ||||||||||| | || Sbjct 115930 ACATTGTCAATGGTGTCAGAGCTCTCAACTTCAAGAGTGATTGTCTTGCCGGTAAGGGTC 115871 Query 139748 TTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 115870 TTCACGAAAATCTGCATACCT 115850 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| || || ||||| || ||||||||||| || |||| || || Sbjct 116519 AACAAGGTGAAGTGTCGATTCTTTCTGGATGTTATAATCAGCCAGCGTGCGACCATCCTC 116460 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||| || ||| |||| ||||| |||||||| ||||| ||||| || || || | Sbjct 116459 GAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGAATGCCCTCCTTATC-CT 116401 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | || | | || | ||| || | | || ||||||| ||| | |||| Sbjct 116400 GAATCTTCGCCTTCACGTTATCAATTGTATCAGAGCTTTCTACCTCAAGGGTGATGGTCT 116341 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || | || || || || |||||||| Sbjct 116340 TTCCAGTAAGAGTCTTCACAAAGATTTGCAT 116310 >seq93447 Length=80558 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GC 139595 ||| ||||| | || | || | ||| | || ||||| || || || ||||| || || Sbjct 27749 GCCACCTCGAAGGCGAAGGACGAGGTGGAGGGTCGACTCCTTCTGGATATTATAGTCAGC 27690 Query 139596 TCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | | |||| || | || |||||||| || || || |||| || |||||||| || || Sbjct 27689 T-AGAGTGCGTCCA-TCCTCGAGCTGCTTTCCGGCGAAGATAAGGCGTTGCTGGTCCGGT 27632 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || |||||||| ||||| ||| || || | | || | ||||||| | |||| Sbjct 27631 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCGGATGACTCC 27572 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | |||||| || || || ||||||||||| || ||||| Sbjct 27571 ACCTCCAGGGTGATCGTCTTCCCCGTTAAGGTTTTTACGAAGATCTGCAT 27522 >seq148200 Length=216050 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | || | || | ||| | || ||||| || || || ||||| || Sbjct 147938 GCCACCTCGAAGGCGAAGGACGAGGTGGAGGGTCGACTCCTTCTGGATATTATAGTCAGC 147879 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || |||| || | || |||||||| || || || |||| || |||||||| || || | Sbjct 147878 CAGAGTGCGTCCA-TCCTCGAGCTGCTTTCCGGCGAAGATAAGGCGTTGCTGGTCCGGTG 147820 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | |||||||| ||||| ||| || || | | || | ||||||| | ||||| Sbjct 147819 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCGGATGACTCCA 147760 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | |||||| || || | ||||||||||| || ||||| Sbjct 147759 CCTCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTTACGAAGATCTGCAT 147711 >seq94009 Length=1666 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| | ||| | ||||||||||| || ||||| || ||| | || | Sbjct 266 ACGAAGAACAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCC 207 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| || |||||||| || || ||||||| | |||||||| || || || ||||| || Sbjct 206 GTCCTCAAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGTGGGATTCCTTCCTT 147 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || |||||| || | | ||| | || |||| | |||||| |||| ||| | Sbjct 146 ATCCTGGATTTTAGACTTAACGTTTTCAATCGTATCGGAGCTCTCCACGTCAAGGGTTAT 87 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | || || || ||||| ||||| Sbjct 86 TGTCTTGCCGGTGAGGGTCTTGACAAATATCTGCAT 51 >seq127156 Length=393785 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| ||||| | |||| || || ||||| || ||| Sbjct 285185 GTGGACTCCTTCTGTATGTTGTAATCAGCAAGGGTGCGACCATCCTCCAGCTGCTTGCCA 285126 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | || ||||| ||||| |||||||| || || ||| ||| ||| Sbjct 285125 GCAAAGATCAGTCTCTGTTGATCTGGAGGAATGCCTTCCTTATCCTGGATCTTTGCTTTC 285066 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | |||||||| | ||| | ||||||||||| | ||| Sbjct 285065 ACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTCTTGCCGGTAAGAGTT 285006 Query 139748 TTTACGAATATTTGCAT 139764 || || || |||||||| Sbjct 285005 TTAACAAAGATTTGCAT 284989 >seq44530 Length=310530 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| ||||| || || ||||| || || || || |||| || || || || Sbjct 30571 GTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGCCAGGGTGCGGCCATCCTCCAGTTG 30630 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||| |||||| |||||| |||||||| || ||||| ||||| || ||||| |||||| Sbjct 30631 TTTGCCAGCAAAGATCAACCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATTTT 30690 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 ||| | | || | || || | | ||||||||||| ||| | || || || || Sbjct 30691 GGCTTTCACGTTATCAATAGTATCAGAGCTCTCCACCTCAAGGGTGATAGTTTTCCCCGT 30750 Query 139741 CAACGTTTTTACGAATATTTGCATA 139765 | || || || ||||| |||||| Sbjct 30751 AAGTGTCTTCACAAATATCTGCATA 30775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495139156880800