Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq142522 93.3 3e-14 seq44588 93.3 3e-14 seq98543 82.4 6e-11 >seq142522 Length=12496 Score = 93.3 bits (102), Expect = 3e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 |||||||| | || ||||||||||| || || || || || || ||||||||||| ||| Sbjct 3814 CCACCTCTAAGCCTCAAAACTAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCTGCT 3755 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | |||||||| ||||| ||||| | |||||||| ||||| || ||| Sbjct 3754 AAG-GTCCGACCATCTTCTAACTGTTTCCCAGCAAAAATCAAACGCTGTTGATCAGGTGG 3696 Query 15256 AATTCCTTCTTTGTC 15270 ||| ||||| ||||| Sbjct 3695 AATGCCTTCCTTGTC 3681 >seq44588 Length=1198 Score = 93.3 bits (102), Expect = 3e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 |||||||| | || ||||||||||| || || || || || || ||||||||||| ||| Sbjct 490 CCACCTCTAAGCCTCAAAACTAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCTGCT 549 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | |||||||| ||||| ||||| | |||||||| ||||| || ||| Sbjct 550 AAG-GTCCGACCATCTTCTAACTGTTTCCCAGCAAAAATCAAACGCTGTTGATCAGGTGG 608 Query 15256 AATTCCTTCTTTGTC 15270 ||| ||||| ||||| Sbjct 609 AATGCCTTCCTTGTC 623 >seq98543 Length=260802 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | ||| ||||| || || ||||| ||||| ||||| || | | |||| Sbjct 115837 AACACAAGATGGAGGGTAGACTCCTTTTGAATGTTATAATCTGCAAGGGTGCGGCCGTCC 115778 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || || ||||| | || || | ||| ||||| ||||| ||||||||||| Sbjct 115777 TCAAGCTGCTTCCCAGCAAAAATTAACCTTTGCTGGTCCGGAGGAATGCCTTCTTTGTCC 115718 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| | |||||||| ||| | || || || | || || || Sbjct 115717 TGGATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCAACTTCAAGAGTGATCGTC 115658 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || || || |||||||| |||||| Sbjct 115657 TTACCAGTTAGGGTCTTCACAAAAATCTGCATA 115625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361520847514209