Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq59128 93.3 3e-14 seq14166 89.7 4e-13 seq94009 87.8 1e-12 seq44530 86.0 5e-12 >seq59128 Length=96712 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||| | ||| || ||||| |||||||||||||| || | || | ||||||| ||||| Sbjct 40047 GTGAAGCGTCGATTCCTTCTGAATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTG 39988 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || || | || | | ||||||||| || | |||||| ||||| ||| || Sbjct 39987 CTTCCCGGCGAAGATTAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTT 39928 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTTTACCTG 19016 | ||| || | | ||| || || | ||| |||| |||| ||| || || ||||| | Sbjct 39927 CGCTTTAACGTTGTCGATCGTGTC-CGAGGACTCCACCTCGAGGGTGATTGTCTTACCCG 39869 Query 19017 TTAAAGTTTTGACAAAAATTTGCATTTT 19044 ||| |||||||| || || ||||| || Sbjct 39868 TTAGGGTTTTGACGAAGATCTGCATCTT 39841 >seq14166 Length=498497 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||| | ||| || ||||| |||||||||||||| || | || ||||||| ||||| Sbjct 8653 GTGAAGCGTCGATTCCTTCTGAATATTGTAATCGGCGAGGGTACGTCCGTCCTCAAGCTG 8594 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || || | || | | ||||||||| || | |||||| ||||| ||| || Sbjct 8593 CTTCCCGGCGAAGATTAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTT 8534 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTTTACCTG 19016 | ||| || | | ||| || || | ||| |||| |||| ||| || || ||||| | Sbjct 8533 CGCTTTAACGTTGTCGATCGTGTC-CGAGGACTCCACCTCGAGGGTGATTGTCTTACCCG 8475 Query 19017 TTAAAGTTTTGACAAAAATTTGCATTTT 19044 ||| |||||||| || || ||||| || Sbjct 8474 TTAGGGTTTTGACGAAGATCTGCATCTT 8447 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||| | ||| || ||||| |||||||||||||| || | || | ||||||| ||||| Sbjct 11657 GTGAAGCGTCGATTCCTTCTGAATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTG 11598 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || || | || | | ||||||||| || | |||||| ||||| ||| || Sbjct 11597 CTTCCCGGCGAAGATTAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTT 11538 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTTTACCTG 19016 | ||| || | | ||| || || | ||| |||| |||| ||| || || || || | Sbjct 11537 CGCTTTAACGTTGTCGATCGTGTC-CGAGGACTCCACCTCGAGGGTGATTGTCTTCCCCG 11479 Query 19017 TTAAAGTTTTGACAAAAATTTGCATTTT 19044 ||| |||||||| || || ||||| || Sbjct 11478 TTAGGGTTTTGACGAAGATCTGCATCTT 11451 >seq94009 Length=1666 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||| || || || ||||| || | | ||| | ||||||| |||||||| || Sbjct 703 GTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGTTTTCCG 644 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| || |||||||| ||| || | |||||||||||| ||||| || Sbjct 643 GCAAAAATCAGCCTCTGCTGGTCCGGTGGGATGCCCTCTTTGTCCTGGATTTTTGACTTA 584 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || ||| || ||| | |||| |||| |||||||| || || || | ||| Sbjct 583 ACGATTTCGATGGTGTCGGAACTCTCCACGTCGAGAGTAATGGTCTTGCCAGTGAGGGTT 524 Query 19025 TTGACAAAAATTTGCATT 19042 |||||||| || |||||| Sbjct 523 TTGACAAAGATCTGCATT 506 >seq44530 Length=310530 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||||||||| ||||| || | ||| | | ||||| || || || || Sbjct 31034 GTGGACTCCTTTTGAATATTATAATCAGCAAGGGTTCGGCCATCCTCGAGTTGCTTGCCG 31093 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || |||||||||||| ||| | |||||| || || || || ||| Sbjct 31094 GCAAAGATCAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGCCTTT 31153 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| || || |||| |||| ||| ||||| || || || | || Sbjct 31154 ACGTTGTCGATGGTGTCAGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 31213 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| ||||| ||||| Sbjct 31214 TTGACGAAAATCTGCAT 31230 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | ||||| ||||| || ||||||||||| || | ||| | | ||||| Sbjct 31249 CACAAGGTGTAGGGTAGATTCCTTCTGGATATTGTAATCAGCAAGGGTTCGGCCATCCTC 31308 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || ||||| |||||| || | |||||| ||||| Sbjct 31309 TAGCTGCTTTCCGGCAAAGATCAGCCTCTGTTGATCCGGCGGGATGCCCTCCTTGTCCTG 31368 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | ||| ||||| | |||| || | ||| ||||| || Sbjct 31369 TATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCCACCTCAAGGGTGATGGTCTT 31428 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| | |||||||| || || ||||| Sbjct 31429 GCCTGTGAGGGTTTTGACGAAGATCTGCAT 31458 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| ||||| || ||||||||||| || | ||| | | ||||| ||||| || || Sbjct 41203 GTAGATTCCTTCTGGATATTGTAATCAGCAAGGGTTCGGCCATCCTCGAGCTGCTTTCCG 41262 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| || || || |||||| || | |||||| ||||| || || || Sbjct 41263 GCAAAAATCAGCCTTTGTTGATCCGGCGGGATGCCCTCCTTGTCCTGTATCTTAGCCTTC 41322 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| ||||| | |||| || | ||| ||||| || ||||| | ||| Sbjct 41323 ACGTTGTCGATGGTATCAGAACTCTCCACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTT 41382 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| || || ||||| Sbjct 41383 TTGACGAAGATCTGCAT 41399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413819208867706