Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq59128 93.3 4e-14 seq14166 93.3 4e-14 seq98543 89.7 4e-13 seq128004 82.4 6e-11 seq94009 82.4 6e-11 >seq59128 Length=96712 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||| |||||||| || | || ||||||| |||||||| ||| || | Sbjct 40034 TCCTTCTGAATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCGGCGAAG 39975 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 ||||| ||||||||||| || | | ||||||||| ||| ||| |||| | | Sbjct 39974 ATTAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTC-GCTTTAACGTT 39916 Query 48656 G-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || || | |||||| ||||| || || || ||||| || || ||||| || Sbjct 39915 GTCGATCGTGTCCGAGGACTCCACCTCGAGGGTGATTGTCTTACCCGTTAGGGTTTTGAC 39856 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 39855 GAAGATCTGCATC 39843 >seq14166 Length=498497 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||| |||||||| || | || ||||||| |||||||| ||| || | Sbjct 8640 TCCTTCTGAATATTGTAATCGGCGAGGGTACGTCCGTCCTCAAGCTGCTTCCCGGCGAAG 8581 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 ||||| ||||||||||| || | | ||||||||| ||| ||| |||| | | Sbjct 8580 ATTAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTC-GCTTTAACGTT 8522 Query 48656 G-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || || | |||||| ||||| || || || ||||| || || ||||| || Sbjct 8521 GTCGATCGTGTCCGAGGACTCCACCTCGAGGGTGATTGTCTTACCCGTTAGGGTTTTGAC 8462 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 8461 GAAGATCTGCATC 8449 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||| |||||||| || | || ||||||| |||||||| ||| || | Sbjct 11644 TCCTTCTGAATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCGGCGAAG 11585 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 ||||| ||||||||||| || | | ||||||||| ||| ||| |||| | | Sbjct 11584 ATTAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTC-GCTTTAACGTT 11526 Query 48656 G-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || || | |||||| ||||| || || || || || || || ||||| || Sbjct 11525 GTCGATCGTGTCCGAGGACTCCACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTGAC 11466 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 11465 GAAGATCTGCATC 11453 >seq98543 Length=260802 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTC 48573 ||||| | ||| || || ||||||||||||||| ||||| || || || || |||| Sbjct 115837 AACACAAGATGGAGGGTAGACTCCTTTTGAATGTTATAATCTGC-AAGGGTGCGGCCGTC 115779 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 ||| |||||||| || | ||||||| | ||||| ||| || | | ||| ||||| Sbjct 115778 CTCAAGCTGCTTCCCAGCAAAAATTAACCTTTGCTGGTCCGGAGGAATGCCTTCTTTGTC 115719 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | || || ||||| | ||||||| |||| ||| || | || || || Sbjct 115718 CTGGATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCAACTTCAAGAGTGATCGT 115659 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || ||||||||||||||||| Sbjct 115658 CTTACCAGTTAGGGTCTTCACAAAAATCTGCAT 115626 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTC 48573 ||||| | ||| || || |||||| |||||||| ||||| || || || || | || Sbjct 23952 AACACAAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCTGC-AAGGGTGCGGCCATC 23894 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 ||| |||||||| || | ||||||| | |||||| ||| || | | ||| ||||| Sbjct 23893 CTCAAGCTGCTTCCCAGCAAAAATTAACCTCTGCTGGTCCGGAGGAATGCCTTCTTTGTC 23834 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | || || ||||| | ||||||| |||| ||| || | || || || Sbjct 23833 CTGGATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCAACTTCAAGAGTGATCGT 23774 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || ||||||||||||||||| Sbjct 23773 CTTACCAGTTAGGGTCTTCACAAAAATCTGCAT 23741 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTC 48573 ||||| | ||| || || |||||| |||||||| ||||| || || || || | || Sbjct 26719 AACACAAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCTGC-AAGGGTGCGGCCATC 26661 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 ||| |||||||| || | ||||||| | |||||| ||| || | | ||| ||||| Sbjct 26660 CTCAAGCTGCTTCCCAGCAAAAATTAACCTCTGCTGGTCCGGAGGAATGCCTTCTTTGTC 26601 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | || || ||||| | ||||||| |||| ||| || | || || || Sbjct 26600 CTGGATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCAACTTCAAGAGTGATCGT 26541 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || ||||||||||||||||| Sbjct 26540 CTTACCAGTTAGGGTCTTCACAAAAATCTGCAT 26508 >seq128004 Length=72010 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||| ||||||||||| || || || || || ||||||| |||||||||||| || | Sbjct 19729 TCCTTCTGAATGTTGTAGTCGGC-AAGGGTACGAGCGTCCTCAAGCTGCTTACCGGCGAA 19671 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| || | ||||| ||| | | | ||||||||| || ||| ||| | Sbjct 19670 AATCAACCTTTGCTGGTCCGGTGAAAGTCCCTCCTTGTCCTGGATCTTCGACTTCACTAT 19611 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | | ||| || | |||| ||||| || || || || || ||||| ||||| || Sbjct 19610 CTCGACGGTGTCAGAGCTCTCCACCTCGAGAGTAATAGTCTTGCCAGTGAGGGTTTTGAC 19551 Query 48715 AAAAATCTGCAT 48726 |||||||||||| Sbjct 19550 AAAAATCTGCAT 19539 >seq94009 Length=1666 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||| ||||||||||| || || || || || ||||||| |||||||||||| | | Sbjct 1153 TCCTTCTGAATGTTGTAGTCGGC-AAGGGTACGAGCGTCCTCAAGCTGCTTACCGGCAAA 1095 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||||| | ||||| || | | || ||||||||| || ||| ||| | Sbjct 1094 GATTAACCTTTGCTGGTCTGGAGAAAGACCCTCCTTGTCCTGGATCTTCGACTTCACGAT 1035 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | | ||| || | |||| ||||| || ||||| || || ||||| ||||| || Sbjct 1034 CTCGACGGTGTCAGAGCTCTCCACCTCGAGCGTAATGGTCTTGCCAGTGAGGGTTTTGAC 975 Query 48715 AAAAATCTGCAT 48726 |||||||||||| Sbjct 974 AAAAATCTGCAT 963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420485469183149