Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq122030 95.1 2e-14 seq39102 95.1 2e-14 seq146607 93.3 5e-14 >seq122030 Length=308131 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||| || ||||| ||||||||||||||||| || || ||||| || | |||| Sbjct 210806 AGTGCCTGCATTGAATAAGGTAGGAGAAGCATGAGTGAACCACCGCAGTGACATCAGATG 210865 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| || | ||| || || || ||||| |||| |||||| |||| || || | ||| | Sbjct 210866 GTAGGTTTTAATGGCAGAATCAATATCTTCATT-ATGAATCCCTATAGCAACTCTCATCA 210924 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 |||| ||||| || ||||| || | || || ||| || | || || |||| | Sbjct 210925 ACATATGCTGCGGCCTTTCCACCACTTTCCCAGATACTTTTAAAAGATAAGACCTTTCGA 210984 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||||||||||||| || | || ||||||| || ||||| || Sbjct 210985 GAGTTTTAAAACCAAAGTAATCATAATCGAAGTCTCTATCATAAATGAT 211033 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | || | ||| || | ||| |||| | | |||||||| | ||| Sbjct 210254 TCCTCCTTGATCAACATACCGAGCAGTATCATTGAAAACCCGTAGCATTGGAACTACACC 210313 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || || | |||||| || || | || || || ||| | |||||||| || ||| || Sbjct 210314 ATTCGAAACACCATTCGTCCCACAAATGTAACTCCCAGTCGCACGAATGTTGTGAATGGA 210373 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| ||||| || || ||| |||| ||||| ||| || || ||||| || Sbjct 210374 GACACCAATTCCGCCAGCAGATTTGCTTATTATAGCGCACTCTTTCAAGGTATCATATAT 210433 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 || || ||||||||||| ||||| || || || |||||| Sbjct 210434 TCCTTCAATGCTATCATCTTTCATGCAAATGAGGAAGCAGCTA 210476 >seq39102 Length=2222 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||| || ||||| ||||||||||||||||| || || ||||| || | |||| Sbjct 645 AGTGCCTGCATTGAATAAGGTAGGAGAAGCATGAGTGAACCACCGCAGTGACATCAGATG 586 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| || | ||| || || || ||||| |||| |||||| |||| || || | ||| | Sbjct 585 GTAGGTTTTAATGGCAGAATCAATATCTTCATT-ATGAATCCCTATAGCAACTCTCATCA 527 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 |||| ||||| || ||||| || | || || ||| || | || || | || | Sbjct 526 ACATATGCTGCGGCCTTTCCACCACTTTCCCAGATACTTTTAAAAGATAAGACCTCTCGA 467 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||||||||||||| || | || |||||||| || ||||| || Sbjct 466 GAGTTTTAAAACCAAAGTAATCATAATCAAAGTCTCTATCATAAATGAT 418 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | || | ||| || | ||| |||| | | |||||||| | ||| Sbjct 1197 TCCTCCTTGATCAACATACCGAGCAGTATCATTGAAAACCCGTAGCATTGGAACTACACC 1138 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || || | |||||| || || | || || || ||| | |||||||| || ||| || Sbjct 1137 ATTCGAAACACCATTCGTCCCACAAATGTAACTCCCAGTCGCACGAATGTTGTGAATGGA 1078 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| ||||| || || ||| |||| ||||| ||| || || ||||| || Sbjct 1077 GACACCAATTCCGCCAGCAGATTTGCTTATTATAGCGCACTCTTTCAAGGTATCATATAT 1018 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 || || ||||||||||| ||||| || || || |||||| Sbjct 1017 TCCTTCAATGCTATCATCTTTCATGCAAATGAGGAAGCAGCTA 975 >seq146607 Length=192245 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 || || ||||| | |||| |||||||| |||| |||| | |||||| |||| ||| || Sbjct 47792 CCCCCTTGATCAACATATCGAGCGGTGTCATTAAAAACACGCAACATGGGAACAATGCCA 47733 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 || || | ||||| || || ||||| ||||| |||||||||| ||| || || Sbjct 47732 TTCGACGTTCCATTCGTTCCACGAATATAACTTCCGGTGGCACGAATGTTATGAACAGAG 47673 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | ||| ||||| || || || || | |||||| || | || ||||| || Sbjct 47672 ACACCAATTCCTCCAGCAGACTTGCTTATAACTGCGCACTCCTTCAGTGTATCATATATC 47613 Query 63552 CCCTCTATGCTATCATCGATCATG 63575 || || ||||||||||| ||||| Sbjct 47612 CCATCAATGCTATCATCTTTCATG 47589 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||| || ||||| || | |||||||||||||| ||||||||| | ||| | | || Sbjct 46419 AGTGCCTGCATTGAACAGTGTAGGAGAAGCGTGAGTAAACCATCGCTGAGACATCAAATG 46360 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| || || || || | ||||| || ||||| || || || || | ||| || Sbjct 46359 GTATGTTCTGATTGCAGACACAATATCATCTTTGTGAATCCCAACAGCAACTCTCATCAA 46300 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||| ||||| ||||| | || ||| | |||||| | ||||||| || | Sbjct 46299 CATGTGTTGAGGCCTTTCGATGACCTTCCCAGAAACTTTCAAGAGGTAGGATCGCTCGAG 46240 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| ||||||||||| | ||| ||| || | || || ||||| Sbjct 46239 GGTTTTGAAACCAAAATAATCGTAGTCAAAATCCCTGTCATATATAAT 46192 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||| || ||||| || | |||||||||||||| ||||||||| | ||| | | || Sbjct 51486 AGTGCCTGCATTGAACAGTGTAGGAGAAGCGTGAGTAAACCATCGCTGAGACATCAAATG 51427 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| || || || || | ||||| || ||||| || || | || | ||| || Sbjct 51426 GTATGTTCTGATTGCAGACACAATATCATCTTTGTGAATCCCAACAGAAACTCTCATCAA 51367 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||| ||||| ||||| | || ||| | |||||| | ||||||| ||| | Sbjct 51366 CATGTGTTGAGGCCTTTCGATGACCTTCCCAGAAACTTTCAAGAGGTAGGATCGTTCGAG 51307 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| ||||||||||| | ||| ||| || | || || ||||| Sbjct 51306 GGTTTTGAAACCAAAATAATCGTAGTCAAAATCCCTGTCATATATAAT 51259 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 || || ||||| | |||| |||||||| |||| |||| | |||||| |||| ||| || Sbjct 52478 CCCCCTTGATCAACATATCGAGCGGTGTCATTAAAAACACGCAACATGGGAACAATGCCA 52419 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 || || | ||||| || || ||||| ||||| |||||||||| ||| || || Sbjct 52418 TTCGACGTTCCATTCGTTCCACGAATATAACTTCCGGTGGCACGAATGTTATGAACAGAG 52359 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | ||| ||||| || || || || | ||| || || | || ||||| || Sbjct 52358 ACACCAATTCCTCCAGCAGACTTGCTTATAACTGCACACTCCTTCAGTGTATCATATATC 52299 Query 63552 CCCTCTATGCTATCATCGATCATG 63575 || || ||||||||||| ||||| Sbjct 52298 CCATCAATGCTATCATCTTTCATG 52275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621785800600840