Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq94009 93.3 3e-14 seq70905 93.3 3e-14 seq78903 89.7 4e-13 seq44530 86.0 5e-12 seq127156 84.2 2e-11 seq98543 84.2 2e-11 >seq94009 Length=1666 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||| || || ||||||||||||| | |||| | ||||||| | ||| Sbjct 709 TGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGT 650 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| |||| |||| ||| |||||| || | |||||||||||| |||| Sbjct 649 TTTCCGGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATGCCCTCTTTGTCCTGGATTTTT 590 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | |||||| |||| || | || ||||| || || || Sbjct 589 GACTTAACGATTTCGATGGTGTCGGAACTCTCCACGTCGAGAGTAATGGTCTTGCCAGTG 530 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 || ||||||||||| ||||||||| Sbjct 529 AGGGTTTTGACAAAGATCTGCATT 506 >seq70905 Length=9780 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 16707 ACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGG 16766 |||| || || || | || || | || || ||||||||||| || || |||||||| | Sbjct 8792 ACCCCCCACGAAGGCGGAGAACGAGGTGGAGTGTGGACTCCTTCTGGATATTGTAGTCCG 8733 Query 16767 CCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826 | | ||| | ||||| | || ||||| ||| | ||||||| ||| |||||| | Sbjct 8732 CAAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCCGGTG 8673 Query 16827 GCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | | || || ||||| || | | |||||| | | | | ||||| | |||| Sbjct 8672 GAATCCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATTGTGTCCGAGCTCTCCA 8613 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| || |||||||| || || ||||| ||||| |||||||| Sbjct 8612 CCTCCAAGGTAATAGTTTTTCCAGTAAGAGTTTTCACAAATATCTGCAT 8564 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||||| || | ||||| | ||| Sbjct 8538 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGCCCATCCTCAAGTTGC 8479 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 || |||||| | ||||||| ||| |||||| ||| | |||||| ||||| Sbjct 8478 TTTCCCGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTC 8429 >seq78903 Length=243834 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||| ||||||| || | ||||| | ||| Sbjct 212408 TGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGCCAGAGTGCGCCCATCCTCAAGTTGC 212467 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || |||||| | ||||||| ||| |||||| ||| | |||||| ||||| || || Sbjct 212468 TTTCCCGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTG 212527 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | ||||| | ||| |||| ||| ||||| || || | Sbjct 212528 GCT--TTCACGTTATCGATGGTGTCCGAGCTCTCAACCTCCAAGGTAATGGTCTTCCCAG 212585 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || |||||||| Sbjct 212586 TAAGAGTCTTCACGAAGATCTGCAT 212610 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 16707 ACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGG 16766 |||| || || || | || || | || || ||||||||||| || || || ||||| | Sbjct 212154 ACCCACCACGAAGGCGGAGAACGAGGTGGAGTGTGGACTCCTTCTGGATATTATAGTCCG 212213 Query 16767 CCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826 | | ||| ||||||| | || || || || | ||||||| ||| |||||| | Sbjct 212214 CAAGGGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGTG 212273 Query 16827 GCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | | || || ||||| || | | |||||| | | | | ||||| | |||| Sbjct 212274 GAATCCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATTGTGTCCGAGCTCTCCA 212333 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| || |||||||| || || ||||| ||||| |||||||| Sbjct 212334 CCTCCAAGGTAATAGTTTTTCCAGTAAGAGTTTTCACAAATATCTGCAT 212382 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| ||||||||||| || || | ||| | ||| Sbjct 212855 AGGACAAGATGGAGAGTGGACTCCTTCTGTATGTTGTAATCAGCAAGGGTGCGACCATCC 212914 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || || | |||||| || ||| | ||| || || || Sbjct 212915 TCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATGCCTTCCTTATCC 212974 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || |||||| ||||| | | | | ||||| | ||| || | |||||| | Sbjct 212975 TGGATCTTTGCT--TTCACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATAG 213032 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || || || ||||| |||||||| Sbjct 213033 TCTTGCCGGTAAGAGTCTTAACAAAGATCTGCAT 213066 >seq44530 Length=310530 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||| || || || || || | |||| | | ||||| | ||| Sbjct 31028 TGAAGGGTGGACTCCTTTTGAATATTATAATCAGCAAGGGTTCGGCCATCCTCGAGTTGC 31087 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| ||| || ||| || | |||||| || || || || Sbjct 31088 TTGCCGGCAAAGATCAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTA 31147 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||| | |||| || | ||||||||| || || | Sbjct 31148 GC--CTTTACGTTGTCGATGGTGTCAGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCAG 31205 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| ||||||||||| Sbjct 31206 TGAGGGTCTTGACGAAAATCTGCAT 31230 >seq127156 Length=393785 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| ||||||||||| || || | ||| | ||| Sbjct 285200 AGGACAAGATGGAGAGTGGACTCCTTCTGTATGTTGTAATCAGCAAGGGTGCGACCATCC 285141 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || || | |||||| || ||| | ||| || || || Sbjct 285140 TCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATGCCTTCCTTATCC 285081 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || |||||| ||||| | | | | ||||| | ||| || | |||||| | Sbjct 285080 TGGATCTTTGCT--TTCACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATAG 285023 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || ||||| ||||| || ||||| Sbjct 285022 TCTTGCCGGTAAGAGTTTTAACAAAGATTTGCAT 284989 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 16707 ACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGG 16766 |||| || || || | || || | || || ||||||||||| || || || ||||| | Sbjct 285901 ACCCCCCACGAAGGCGGAGAACGAGGTGGAGTGTGGACTCCTTCTGAATATTATAGTCCG 285842 Query 16767 CCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826 | | ||| | ||||| | || || || ||| | ||||||| ||| |||||| | Sbjct 285841 CAAGGGTGCGACCATCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTG 285782 Query 16827 GCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | | || || ||||| || | | |||||| | | | | ||||| | |||| Sbjct 285781 GAATCCCTTCCTTGTCTTGGATCTTCGCCTTCACGTTGTCAATTGTGTCCGAGCTCTCCA 285722 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| || |||||||| || || ||||| ||||| |||||||| Sbjct 285721 CCTCCAAGGTAATAGTTTTTCCAGTAAGAGTTTTCACAAATATCTGCAT 285673 >seq98543 Length=260802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | || || | ||| || || ||||||||||| ||||| || || || Sbjct 115852 CCTCCCCTGAGTCGCAACACAAGATGGAGGGTAGACTCCTTTTGAATGTTATAATCTGCA 115793 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || || || ||| |||| | || || |||||| ||| Sbjct 115792 AGGGTGCGGCCGTCCTCAAGCTGCTTCCCAGCAAAAATTAACCTTTGCTGGTCCGGAGGA 115733 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | | |||||| | ||| Sbjct 115732 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTGACATTGTCTATGGTGTCGGAGCTCTCAA 115675 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||| || || || || || || || |||||||||||||| Sbjct 115674 CTTCAAGAGTGATCGTCTTACCAGTTAGGGTCTTCACAAAAATCTGCAT 115626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404351649895510