Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq142522 96.9 2e-15 seq44588 96.9 2e-15 seq94009 91.5 1e-13 >seq142522 Length=12496 Score = 96.9 bits (106), Expect = 2e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||||| | || ||||||||||| || || || || || || ||||||||||| ||| Sbjct 3814 CCACCTCTAAGCCTCAAAACTAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCTGCT 3755 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | |||||||| ||||| ||||| | |||||||||||||| || ||| Sbjct 3754 AAGG-TCCGACCATCTTCTAACTGTTTCCCAGCAAAAATCAAACGCTGTTGATCAGGTGG 3696 Query 15069 AATTCCTTCCTTGTC 15083 ||| ||||||||||| Sbjct 3695 AATGCCTTCCTTGTC 3681 >seq44588 Length=1198 Score = 96.9 bits (106), Expect = 2e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||||| | || ||||||||||| || || || || || || ||||||||||| ||| Sbjct 490 CCACCTCTAAGCCTCAAAACTAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCTGCT 549 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | |||||||| ||||| ||||| | |||||||||||||| || ||| Sbjct 550 AAGG-TCCGACCATCTTCTAACTGTTTCCCAGCAAAAATCAAACGCTGTTGATCAGGTGG 608 Query 15069 AATTCCTTCCTTGTC 15083 ||| ||||||||||| Sbjct 609 AATGCCTTCCTTGTC 623 >seq94009 Length=1666 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || |||||||| ||||| || |||||||| ||| ||| ||| |||| || | ||| Sbjct 253 TGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCAAGCTGT 194 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| ||| | |||| | ||| || || ||| ||||||||||| || ||||| Sbjct 193 TTGCCGGCGAAGATCAGCCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGGATTTTA 134 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || |||| || |||||| | || ||||| | ||| || || || || || Sbjct 133 GACTTAACGTTTTCAATCGTATCGGAGCTCTCCACGTCAAGGGTTATTGTCTTGCCGGTG 74 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 73 AGGGTCTTGACAAATATCTGCAT 51 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356742349463465