Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq122030 114 1e-20 seq39102 114 1e-20 seq146607 89.7 6e-13 >seq122030 Length=308131 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| || |||| | || |||||| || | |||| Sbjct 210255 CCTCCTTGATCAACATACCGAGCAGTATCATTGAAAACCCGTAGCATTGGAACTACACCA 210314 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | |||||| || || |||| ||||| ||| | || | || || ||| || Sbjct 210315 TTCGAAACACCATTCGTCCCACAAATGTAACTCCCAGTCGCACGAATGTTGTGAATGGAG 210374 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||||| ||| ||| ||| | ||||||||| ||| Sbjct 210375 ACACCAATTCCGCCAGCAGATTTGCTTATTATAGCGCACTCTTTCAAGGTATCATATATT 210434 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| || ||||||||| |||| Sbjct 210435 CCTTCAATGCTATCATCTTTCAT 210457 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| |||| ||| ||||| || ||||| |||||| | ||||| | ||| | || | Sbjct 210806 AGTGCCTGCATTGAATAAGGTAGGAGAAGCATGAGTGAACCACCGCAGTGACATCAGATG 210865 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 || |||| ||| ||||||| ||||| |||| ||| || ||||||| || | ||| | Sbjct 210866 GTAGGTTTTAATGGCAGAATCAATATCTTCATT-ATGAATCCCTATAGCAACTCTCATCA 210924 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 |||||| || || ||||| || | ||| | || ||| |||||||| || |||| | Sbjct 210925 ACATATGCTGCGGCCTTTCCACCACTTTCCCAGATACTTTTAAAAGATAAGACCTTTCGA 210984 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 |||||||||||||| || | || ||||| |||||| ||| || Sbjct 210985 GAGTTTTAAAACCAAAGTAATCATAATCGAAGTCTCTATCATAAATGAT 211033 >seq39102 Length=2222 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| || |||| | || |||||| || | |||| Sbjct 1196 CCTCCTTGATCAACATACCGAGCAGTATCATTGAAAACCCGTAGCATTGGAACTACACCA 1137 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | |||||| || || |||| ||||| ||| | || | || || ||| || Sbjct 1136 TTCGAAACACCATTCGTCCCACAAATGTAACTCCCAGTCGCACGAATGTTGTGAATGGAG 1077 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||||| ||| ||| ||| | ||||||||| ||| Sbjct 1076 ACACCAATTCCGCCAGCAGATTTGCTTATTATAGCGCACTCTTTCAAGGTATCATATATT 1017 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| || ||||||||| |||| Sbjct 1016 CCTTCAATGCTATCATCTTTCAT 994 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| |||| ||| ||||| || ||||| |||||| | ||||| | ||| | || | Sbjct 645 AGTGCCTGCATTGAATAAGGTAGGAGAAGCATGAGTGAACCACCGCAGTGACATCAGATG 586 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 || |||| ||| ||||||| ||||| |||| ||| || ||||||| || | ||| | Sbjct 585 GTAGGTTTTAATGGCAGAATCAATATCTTCATT-ATGAATCCCTATAGCAACTCTCATCA 527 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 |||||| || || ||||| || | ||| | || ||| |||||||| || | || | Sbjct 526 ACATATGCTGCGGCCTTTCCACCACTTTCCCAGATACTTTTAAAAGATAAGACCTCTCGA 467 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 |||||||||||||| || | || |||||| |||||| ||| || Sbjct 466 GAGTTTTAAAACCAAAGTAATCATAATCAAAGTCTCTATCATAAATGAT 418 >seq146607 Length=192245 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| |||||||| | ||||| || || | ||| |||| | ||||| || ||||| || Sbjct 52479 ACCCCCTTGATCAACATATCGAGCGGTGTCATTAAAAACACGCAACATGGGAACAATGCC 52420 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| || | ||||| ||||| |||||||||||| | || | || ||| || || Sbjct 52419 ATTCGACGTTCCATTCGTTCCACGAATATAACTTCCGGTGGCACGAATGTTATGAACAGA 52360 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| || || || || || ||| | |||||| || || |||||||| || Sbjct 52359 GACACCAATTCCTCCAGCAGACTTGCTTATAACTGCACACTCCTTCAGTGTATCATATAT 52300 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 || || || ||||||||| |||| Sbjct 52299 CCCATCAATGCTATCATCTTTCAT 52276 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| |||||||| | ||||| || || | ||| |||| | ||||| || ||||| || Sbjct 47793 ACCCCCTTGATCAACATATCGAGCGGTGTCATTAAAAACACGCAACATGGGAACAATGCC 47734 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| || | ||||| ||||| |||||||||||| | || | || ||| || || Sbjct 47733 ATTCGACGTTCCATTCGTTCCACGAATATAACTTCCGGTGGCACGAATGTTATGAACAGA 47674 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| || || || || || ||| | || ||| || || |||||||| || Sbjct 47673 GACACCAATTCCTCCAGCAGACTTGCTTATAACTGCGCACTCCTTCAGTGTATCATATAT 47614 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 || || || ||||||||| |||| Sbjct 47613 CCCATCAATGCTATCATCTTTCAT 47590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561060825432360