Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq98543 109 1e-18 seq94009 93.3 8e-14 seq86722 86.0 1e-11 >seq98543 Length=260802 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || || | ||| | || ||||| | |||| ||| || ||| ||||| || Sbjct 23970 ATACCTCCCCTGAGTCGCAACACAAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCT 23911 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || || || ||||||||||| ||||| || || ||| Sbjct 23910 GCAAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAAATTAACCTCTGCTGGTCCGGA 23851 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| || || || |||| || | ||| || || ||||| |||| Sbjct 23850 GGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCA 23791 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || ||||| ||||| || || ||||| || ||||| Sbjct 23790 ACTTCAAGAGTGATCGTCTTACCAGTTAGGGTCTTCACAAAAATCTGCAT 23741 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || || | ||| | || ||||| | |||| ||| || ||| ||||| || Sbjct 26737 ATACCTCCCCTGAGTCGCAACACAAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCT 26678 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || || || ||||||||||| ||||| || || ||| Sbjct 26677 GCAAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAAATTAACCTCTGCTGGTCCGGA 26618 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| || || || |||| || | ||| || || ||||| |||| Sbjct 26617 GGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCA 26558 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || ||||| ||||| || || ||||| || ||||| Sbjct 26557 ACTTCAAGAGTGATCGTCTTACCAGTTAGGGTCTTCACAAAAATCTGCAT 26508 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || || | ||| | || ||||| | |||| ||| || ||| ||||| || Sbjct 115855 ATACCTCCCCTGAGTCGCAACACAAGATGGAGGGTAGACTCCTTTTGAATGTTATAATCT 115796 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | || || | || || || ||||||||||| || || || || ||| Sbjct 115795 GCAAGGGTGCGGCCGTCCTCAAGCTGCTTCCCAGCAAAAATTAACCTTTGCTGGTCCGGA 115736 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| || || || |||| || | ||| || || ||||| |||| Sbjct 115735 GGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCA 115676 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || ||||| ||||| || || ||||| || ||||| Sbjct 115675 ACTTCAAGAGTGATCGTCTTACCAGTTAGGGTCTTCACAAAAATCTGCAT 115626 >seq94009 Length=1666 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || || || | || | |||||| || || |||||||| | |||| Sbjct 721 CGAAGAACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCG 662 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||||||||||| | ||||| || || || || || || ||||| Sbjct 661 TCCTCAAGCTGTTTTCCGGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATGCCCTCTTTG 602 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | || | || || || |||||| ||| || || ||||| || Sbjct 601 TCCTGGATTTTTGACTTAACGATTTCGATGGTGTCGGAACTCTCCACGTCGAGAGTAATG 542 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || ||||| ||||| || |||||| Sbjct 541 GTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATT 506 >seq86722 Length=38260 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || |||| || || || || || | |||| ||| || || || ||||| Sbjct 14493 ATCCCTCCCCTCAGACGGAGAACAAGGTGGAGTGTAAACTCCTTCTGGATGTTGTAGTCT 14552 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || | || || ||||| || || || || || ||||| ||| Sbjct 14553 GCAAGGGTACGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAACCTTTGCTGATCTGGA 14612 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||||||||| ||||||| || | || || || || || ||| Sbjct 14613 GGGATGCCCTCTTTATCTTGAATTTTGGCCTTCACGTTGTCGATGGTGTCTGAGCTTTCA 14672 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || ||||| ||||| || || || || ||||| || ||||| Sbjct 14673 ACCTCTAGGGTGATAGTCTTACCGGTGAGAGTCTTCACAAAGATCTGCAT 14722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897977118073680