Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq98543 109 1e-18 seq142522 95.1 2e-14 seq44588 95.1 2e-14 seq44530 86.0 1e-11 >seq98543 Length=260802 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || || ||||| || || | ||| | |||| ||| || ||| ||||||||| Sbjct 23970 ATACCTCCCCTGAGTCGCAACACAAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCT 23911 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | || || |||||||||||||| ||||| ||||| || Sbjct 23910 GCAAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAAATTAACCTCTGCTGGTCCGGA 23851 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || || || || ||||| ||| || || || || Sbjct 23850 GGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCA 23791 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || || |||||||||| || || | || |||||||| Sbjct 23790 ACTTCAAGAGTGATCGTCTTACCAGTTAGGGTCTTCACAAAAATCTGCAT 23741 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || || ||||| || || | ||| | |||| ||| || ||| ||||||||| Sbjct 26737 ATACCTCCCCTGAGTCGCAACACAAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCT 26678 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | || || |||||||||||||| ||||| ||||| || Sbjct 26677 GCAAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAAATTAACCTCTGCTGGTCCGGA 26618 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || || || || ||||| ||| || || || || Sbjct 26617 GGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCA 26558 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || || |||||||||| || || | || |||||||| Sbjct 26557 ACTTCAAGAGTGATCGTCTTACCAGTTAGGGTCTTCACAAAAATCTGCAT 26508 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || || ||||| || || | ||| | |||| ||| || ||| ||||||||| Sbjct 115855 ATACCTCCCCTGAGTCGCAACACAAGATGGAGGGTAGACTCCTTTTGAATGTTATAATCT 115796 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | || || |||||||||||||| || || ||||| || Sbjct 115795 GCAAGGGTGCGGCCGTCCTCAAGCTGCTTCCCAGCAAAAATTAACCTTTGCTGGTCCGGA 115736 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || || || || ||||| ||| || || || || Sbjct 115735 GGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCA 115676 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || || |||||||||| || || | || |||||||| Sbjct 115675 ACTTCAAGAGTGATCGTCTTACCAGTTAGGGTCTTCACAAAAATCTGCAT 115626 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || | ||| | ||||| || || |||||| || || Sbjct 27193 ATGCCACCACGAAGACGGAGCACAAGATGAAGAGTAGATTCCTTCTGAATATTGTAGTCC 27134 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | || |||||||||||||| | | ||| ||||| ||| Sbjct 27133 GCAAGGGTGCGACCATCCTCAAGCTGCTTACCAGCAAAAATGAGGCGCTGCTGGTCCGGT 27074 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| |||||| || ||||| ||||| || || || Sbjct 27073 GGAATCCCCTCCTTATCTTGGATTTTAGCCTTAACATTGTCAATAGTGTCGGAGCTCTCA 27014 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || ||||| ||||| | ||||| | ||||||||||| Sbjct 27013 ACTTCAAGTGTGATTGTTTTTCCAGTGAGGGTTTTCACAAATATCTGCAT 26964 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || || || | || | || | ||| | ||| || ||| ||||| ||| Sbjct 26509 ATACCACCCCTGAGCCGGAGCACAAGGTGGAGAGTGGACTCCTTCTGAATGTTATAGTCT 26450 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | || || |||||||| || || ||||||||||| || Sbjct 26449 GCGAGTGTGCGGCCGTCCTCAAGCTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCCGGA 26390 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || ||||| || || || || || Sbjct 26389 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCA 26330 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| || || || || ||||| || || | ||| ||||||||| Sbjct 26329 ACTTCAAGAGTGATCGTCTTGCCGGTTAAGGTCTTCACGAAAATCTGCATT 26279 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || | ||| | ||||| || || |||||| || || Sbjct 28705 ATGCCACCACGAAGACGGAGCACAAGATGAAGAGTAGATTCCTTCTGAATATTGTAGTCC 28646 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | || |||||||||||||| | | ||| ||||| ||| Sbjct 28645 GCAAGGGTGCGACCATCCTCAAGCTGCTTACCAGCAAAAATGAGGCGCTGCTGGTCCGGT 28586 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| |||||| || ||||| ||||| || || || Sbjct 28585 GGAATCCCCTCCTTATCTTGGATTTTAGCCTTAACATTGTCAATAGTGTCGGAGCTCTCA 28526 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || || || ||||| | ||||| | ||||||||||| Sbjct 28525 ACTTCAAGTGTGATTGTCTTTCCAGTGAGGGTTTTCACAAATATCTGCAT 28476 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || | ||| | ||||| || || |||||| || || Sbjct 116311 ATGCCACCACGAAGACGGAGCACAAGATGAAGAGTAGATTCCTTCTGAATATTGTAGTCC 116252 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | || |||||||||||||| | | ||| ||||| ||| Sbjct 116251 GCAAGGGTGCGACCATCCTCAAGCTGCTTACCAGCAAAAATGAGGCGCTGCTGGTCCGGT 116192 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| |||||| || ||||| ||||| || || || Sbjct 116191 GGAATCCCCTCCTTATCTTGGATTTTAGCCTTAACATTGTCAATAGTGTCGGAGCTCTCA 116132 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || || || ||||| | ||||| | ||||||||||| Sbjct 116131 ACTTCAAGTGTGATTGTCTTTCCAGTGAGGGTTTTCACAAATATCTGCAT 116082 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || || || | || | || | ||| | ||| || ||| ||||| ||| Sbjct 115627 ATACCACCCCTGAGCCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGAATGTTATAGTCT 115568 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | || || |||||||| || || ||||||||||| || Sbjct 115567 GCGAGTGTGCGGCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCCGGA 115508 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || ||||| || || || || || Sbjct 115507 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCA 115448 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| || || || || ||||| || || | ||| ||||||||| Sbjct 115447 ACTTCAAGAGTGATCGTCTTGCCGGTTAAGGTCTTCACGAAAATCTGCATT 115397 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| ||| || ||| ||||| |||| || | || | || || | ||||| ||| Sbjct 23481 GTAGACTCCTTCTGAATGTTATAGTCTGCCAAGGTGCGGCCATCCTCAAGCTGTTTCCCA 23422 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 |||||||| || ||||| ||||| || || |||||||| ||||| || || || || Sbjct 23421 GCAAAAATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTATCCTGGATCTTGGCCTTG 23362 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 || || || ||||| || ||| || || || ||||| || || || || | || Sbjct 23361 ACGTTGTCAATGGTATCAGAACTTTCGACCTCAAGTGTAATTGTCTTGCCTGTAAGGGTC 23302 Query 172053 TTAATGAATATCTGCAT 172069 |||| || |||||||| Sbjct 23301 TTAACAAAAATCTGCAT 23285 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| ||| || ||| ||||| |||| || | || | || || | ||||| ||| Sbjct 26248 GTAGACTCCTTCTGAATGTTATAGTCTGCCAAGGTGCGGCCATCCTCAAGCTGTTTCCCA 26189 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 |||||||| || ||||| ||||| || || |||||||| ||||| || || || || Sbjct 26188 GCAAAAATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTATCCTGGATCTTGGCCTTG 26129 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 || || || ||||| || ||| || || || ||||| || || || || | || Sbjct 26128 ACGTTGTCAATGGTATCAGAACTTTCGACCTCAAGTGTAATTGTCTTGCCTGTAAGGGTC 26069 Query 172053 TTAATGAATATCTGCAT 172069 |||| || |||||||| Sbjct 26068 TTAACAAAAATCTGCAT 26052 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| ||| || ||| ||||| |||| || | || | || || | ||||| ||| Sbjct 115366 GTAGACTCCTTCTGAATGTTATAGTCTGCCAAGGTGCGGCCATCCTCAAGCTGTTTCCCA 115307 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 |||||||| || ||||| ||||| || || |||||||| ||||| || || || || Sbjct 115306 GCAAAAATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTATCCTGGATCTTGGCCTTG 115247 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 || || || ||||| || ||| || || || ||||| || || || || | || Sbjct 115246 ACGTTGTCAATGGTATCAGAACTTTCGACCTCAAGTGTAATTGTCTTGCCTGTAAGGGTC 115187 Query 172053 TTAATGAATATCTGCAT 172069 |||| || |||||||| Sbjct 115186 TTAACAAAAATCTGCAT 115170 >seq142522 Length=12496 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 |||| | ||||||||||| | || |||||||| | ||| | ||| || ||| || | Sbjct 3822 TCATTGTTCCACCTCTAAGCCTCAAAACTAAATGGAGAGTTGACTCCTTCTGAATGTTGT 3763 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| ||| | || | || || || ||||| ||||||||||| || | |||||| | Sbjct 3762 AATCTGCTAAGGTCCGACCATCTTCTAACTGTTTCCCAGCAAAAATCAAACGCTGTTGAT 3703 Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979 ||||||| || ||||| || || || Sbjct 3702 CAGGTGGAATGCCTTCCTTGTCCTG 3678 >seq44588 Length=1198 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 |||| | ||||||||||| | || |||||||| | ||| | ||| || ||| || | Sbjct 482 TCATTGTTCCACCTCTAAGCCTCAAAACTAAATGGAGAGTTGACTCCTTCTGAATGTTGT 541 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| ||| | || | || || || ||||| ||||||||||| || | |||||| | Sbjct 542 AATCTGCTAAGGTCCGACCATCTTCTAACTGTTTCCCAGCAAAAATCAAACGCTGTTGAT 601 Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979 ||||||| || ||||| || || || Sbjct 602 CAGGTGGAATGCCTTCCTTGTCCTG 626 >seq44530 Length=310530 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || | || | ||||| || || |||||| || ||| Sbjct 30545 ATACCACCACGAAGGCGGAGCACCAGGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCT 30604 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || |||| |||||| |||||||| || || | || ||||| || Sbjct 30605 GCCAGGGTGCGGCCATCCTCCAGTTGTTTGCCAGCAAAGATCAACCGTTGCTGGTCTGGA 30664 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || ||||| ||| || ||| |||||||| || || Sbjct 30665 GGGATGCCCTCCTTGTCCTGGATTTTGGCTTTCACGTTATCAATAGTATCAGAGCTCTCC 30724 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || ||||| || || | ||| || | ||||||||||| Sbjct 30725 ACCTCAAGGGTGATAGTTTTCCCCGTAAGTGTCTTCACAAATATCTGCAT 30774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903448498384200