Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq44530 98.7 8e-16 seq127156 91.5 1e-13 seq78903 82.4 6e-11 >seq44530 Length=310530 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || |||||||| | || ||||| ||||| ||| | || |||| | Sbjct 41399 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACCCTTGAGGTGGAGAGTTCT 41340 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || ||||| ||||| || ||| | || ||||||| Sbjct 41339 GATACCATCGACAACGTGAAGGCTAAGATACAGGACAAGGAGGGCATCCCGCCGGATCAA 41280 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || |||| ||| || || ||||| ||||||| | |||| | || |||||||| Sbjct 41279 CAAAGGCTGATTTTTGCCGGAAAGCAGCTCGAGGATGGCCGAACCCTTGCTGATTACAAT 41220 Query 110453 ATTCAAAAAGAATCTAC 110469 || || || |||||||| Sbjct 41219 ATCCAGAAGGAATCTAC 41203 >seq127156 Length=393785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 |||||||| ||||| |||||| | |||||||| || || ||| |||| ||| || || Sbjct 284989 ATGCAAATCTTTGTTAAAACTCTTACCGGCAAGACTATCACCCTCGAGGTGGAAAGCTCT 285048 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || ||| ||||| || || |||||| | || ||| Sbjct 285049 GAC---ACCATCGACAACGTGAAAGCAAAGATCCAGGATAAGGAAGGCATTCCTCCAGAT 285105 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| ||||| || | ||| || || ||||||||||||| | || | || |||||| Sbjct 285106 CAACAGAGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTTGCTGATTAC 285165 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| || || || || || Sbjct 285166 AACATACAGAAGGAGTCCAC 285185 >seq78903 Length=243834 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 ||||| || ||||| || ||| | |||||||| || || ||| |||| ||| || || Sbjct 213066 ATGCAGATCTTTGTTAAGACTCTTACCGGCAAGACTATCACCCTCGAGGTGGAAAGCTCT 213007 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || ||| ||||| || || |||||| | || ||| Sbjct 213006 GAC---ACCATCGACAACGTGAAAGCAAAGATCCAGGATAAGGAAGGCATTCCTCCAGAT 212950 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| ||||| || | ||| || || ||||||||||||| | || | || |||||| Sbjct 212949 CAACAGAGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTTGCTGATTAC 212890 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| || || || || || Sbjct 212889 AACATACAGAAGGAGTCCAC 212870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412091155762457