Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq94009 91.5 1e-13 seq127156 89.7 4e-13 seq44530 89.7 4e-13 >seq94009 Length=1666 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||||||||| | || ||||| |||||||| |||| |||| | Sbjct 506 AATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATTACTCTCGACGTGGAGAGTTC 565 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| || || ||| || || ||||| ||| | || ||| || Sbjct 566 CGACACCATCGAAATCGTTAAGTCAAAAATCCAGGACAAAGAGGGCATCCCACCGGACCA 625 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || |||| ||| || |||||||| ||||||| | ||| | | |||||||| Sbjct 626 GCAGAGGCTGATTTTTGCCGGAAAACAGCTTGAGGACGGCCGAACCCTCTCCGACTACAA 685 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || || ||||| || Sbjct 686 CATCCAGAAAGAGTCGAC 703 >seq127156 Length=393785 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| |||||| | || ||||| || || ||| |||| ||| ||| Sbjct 284989 ATGCAAATCTTTGTTAAAACTCTTACCGGCAAGACTATCACCCTCGAGGTGGAAAGCTCT 285048 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || ||| |||||| ||||| |||||| | || ||||| Sbjct 285049 -GACACCATCGACAACGTGAAAGCAAAGATCCAGGATAAGGAAGGCATTCCTCCAGATCA 285107 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||| || | ||| || || ||||||||||| | || | || || ||||| Sbjct 285108 ACAGAGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTTGCTGATTACAA 285167 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 285168 CATACAGAAGGAGTCCAC 285185 >seq44530 Length=310530 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| ||||| || | || ||||| ||||| ||| |||| |||| ||| Sbjct 31230 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGAGCTCT 31171 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | ||||| ||||| ||||| || ||| | ||| |||||| Sbjct 31170 -GACACCATCGACAACGTAAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCGGATCA 31112 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || || || ||||| | | ||| | || || || || Sbjct 31111 GCAGAGGCTGATCTTTGCCGGCAAGCAACTCGAGGATGGCCGAACCCTTGCTGATTATAA 31052 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||||||||||| || Sbjct 31051 TATTCAAAAGGAGTCCAC 31034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398151740325661