Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq142522 93.3 7e-14 seq44588 93.3 7e-14 seq98543 91.5 2e-13 >seq142522 Length=12496 Score = 93.3 bits (102), Expect = 7e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || |||||||||||||| |||||||| | | |||||||| || ||||| ||||| ||| Sbjct 3684 AAGGAAGGCATTCCACCTGATCAACAGCGTTTGATTTTTGCTGGGAAACAGTTAGAAGAT 3743 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATT 146242 | | || ||| ||||||| || || || || || || ||| |||||||||| || Sbjct 3744 GGTCGGACCTTAGCAGATTACAACATTCAGAAGGAGTCAACTCTCCATTTAGTTTT 3799 >seq44588 Length=1198 Score = 93.3 bits (102), Expect = 7e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || |||||||||||||| |||||||| | | |||||||| || ||||| ||||| ||| Sbjct 620 AAGGAAGGCATTCCACCTGATCAACAGCGTTTGATTTTTGCTGGGAAACAGTTAGAAGAT 561 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATT 146242 | | || ||| ||||||| || || || || || || ||| |||||||||| || Sbjct 560 GGTCGGACCTTAGCAGATTACAACATTCAGAAGGAGTCAACTCTCCATTTAGTTTT 505 >seq98543 Length=260802 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || ||||||||||| || |||| || || || Sbjct 26965 TGCAGATATTTGTGAAAACCCTCACTGGAAAAACAATCACACTTGAAGTTGAGAGCTCCG 27024 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| || |||||| ||| ||| || || |||||||| || || | Sbjct 27025 ACACTATTGACAATGTTAAGGCTAAAATCCAAGATAAGGAGGGGATTCCACCGGACCAGC 27084 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | ||||||||||| ||||| || | || ||| | | || | | || || |||| Sbjct 27085 AGCGCCTCATTTTTGCTGGTAAGCAGCTTGAGGATGGTCGCACCCTTGCGGACTACAATA 27144 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | || || ||||| ||| | ||| Sbjct 27145 TTCAGAAGGAATCTACTCTTCAT 27167 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || ||||| ||||| || |||| || || || Sbjct 28477 TGCAGATATTTGTGAAAACCCTCACTGGAAAGACAATCACACTTGAAGTTGAGAGCTCCG 28536 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| || |||||| ||| ||| || || |||||||| || || | Sbjct 28537 ACACTATTGACAATGTTAAGGCTAAAATCCAAGATAAGGAGGGGATTCCACCGGACCAGC 28596 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | ||||||||||| ||||| || | || ||| | | || | | || || |||| Sbjct 28597 AGCGCCTCATTTTTGCTGGTAAGCAGCTTGAGGATGGTCGCACCCTTGCGGACTACAATA 28656 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | || || ||||| ||| | ||| Sbjct 28657 TTCAGAAGGAATCTACTCTTCAT 28679 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || ||||| ||||| || |||| || || || Sbjct 116083 TGCAGATATTTGTGAAAACCCTCACTGGAAAGACAATCACACTTGAAGTTGAGAGCTCCG 116142 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| || |||||| ||| ||| || || |||||||| || || | Sbjct 116143 ACACTATTGACAATGTTAAGGCTAAAATCCAAGATAAGGAGGGGATTCCACCGGACCAGC 116202 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | ||||||||||| ||||| || | || ||| | | || | | || || |||| Sbjct 116203 AGCGCCTCATTTTTGCTGGTAAGCAGCTTGAGGATGGTCGCACCCTTGCGGACTACAATA 116262 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | || || ||||| ||| | ||| Sbjct 116263 TTCAGAAGGAATCTACTCTTCAT 116285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 784700700845080