Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq147531 93.3 5e-14 seq94843 93.3 5e-14 seq44559 93.3 5e-14 >seq147531 Length=255815 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTT-CAGGAATGGCCCAAAAAGGAACTTGTGG 193498 ||||| ||| | || || ||||||||| || |||| |||| | |||| |||||| ||| Sbjct 238720 CGTATTCCTCAGATTGGAGATAAATTTAGTAGCAGGCATGGTC-AAAAGGGAACTGTTGG 238778 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 ||||| |||| | || ||||||||||||| || | | ||| || || |||||||| Sbjct 238779 TATGACTTATACTCAGGAAGATATGCCATGGACTGTTGAAGGCATTACGCCTGATATTAT 238838 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTAT 193606 | | |||||| || ||||| || | ||||| || |||| |||| Sbjct 238839 TGTGAATCCACATGCCATTCCCTCTCGGATGACTATCGGTCAACTTAT 238886 >seq94843 Length=22341 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTT-CAGGAATGGCCCAAAAAGGAACTTGTGG 193498 ||||| ||| | || || ||||||||| || |||| |||| | |||| |||||| ||| Sbjct 6439 CGTATTCCTCAGATTGGAGATAAATTTAGTAGCAGGCATGGTC-AAAAGGGAACTGTTGG 6381 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 ||||| |||| | || ||||||||||||| || | | ||| || || |||||||| Sbjct 6380 TATGACTTATACTCAGGAAGATATGCCATGGACTGTTGAAGGCATTACGCCTGATATTAT 6321 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTAT 193606 | | |||||| || ||||| || | ||||| || |||| |||| Sbjct 6320 TGTGAATCCACATGCCATTCCCTCTCGGATGACTATCGGTCAACTTAT 6273 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTT-CAGGAATGGCCCAAAAAGGAACTTGTGG 193498 ||||| ||| | || || ||||||||| || |||| |||| | |||| |||||| ||| Sbjct 14624 CGTATTCCTCAGATTGGAGATAAATTTAGTAGCAGGCATGGTC-AAAAGGGAACTGTTGG 14566 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 ||||| |||| | || ||||||||||||| || | | ||| || || |||||||| Sbjct 14565 TATGACTTATACTCAGGAAGATATGCCATGGACTGTTGAAGGCATTACGCCTGATATTAT 14506 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTAT 193606 | | |||||| || ||||| || | ||||| || |||| |||| Sbjct 14505 TGTGAATCCACATGCCATTCCCTCTCGGATGACTATCGGTCAACTTAT 14458 >seq44559 Length=1270 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTT-CAGGAATGGCCCAAAAAGGAACTTGTGG 193498 ||||| ||| | || || ||||||||| || |||| |||| | |||| |||||| ||| Sbjct 416 CGTATTCCTCAGATTGGAGATAAATTTAGTAGCAGGCATGGTC-AAAAGGGAACTGTTGG 474 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 ||||| |||| | || ||||||||||||| || | | ||| || || |||||||| Sbjct 475 TATGACTTATACTCAGGAAGATATGCCATGGACTGTTGAAGGCATTACGCCTGATATTAT 534 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTAT 193606 | | |||||| || ||||| || | ||||| || |||| |||| Sbjct 535 TGTGAATCCACATGCCATTCCCTCTCGGATGACTATCGGTCAACTTAT 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633993398701720