Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq146110 190 3e-42 seq148002 131 2e-24 >seq146110 Length=166024 Score = 190 bits (210), Expect = 3e-42 Identities = 278/385 (72%), Gaps = 11/385 (3%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 ||||| | ||||| ||| ||||||| |||||||||| | ||| ||||| |||||| | Sbjct 155472 AACCCCGATCGCTTCTGTA-TGTTCCCGATCCGCTACCCTCAGATTTGGGAGATGTACAA 155414 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTC- 1455851 |||| | |||||||| || ||||| || || |||||||| ||| | | ||| || Sbjct 155413 GAAAG-CAGAGGCCTCTTTCTGGACTGCGGAAGAGGTCGATCTCTCA--CAAGACGTTCG 155357 Query 1455852 -CACTGGGTGT---CGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTT 1455907 || |||| | || | | ||||||||||| || |||| ||||||| ||||| Sbjct 155356 GCAATGGGATCACACCCTCACCTCTGACGAGCGCCACTTTATCACCTACGTCCTGGCCTT 155297 Query 1455908 TTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGG 1455967 || |||||| ||||| |||||| |||||||| ||||| ||||| ||| ||||| Sbjct 155296 CTT-CGCCGCTTCTGATGGTATCGTGCTGGAGAACCTCGCCGGACGCTTCATGCGAGAGG 155238 Query 1455968 TCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACT 1456027 | ||| | || ||||| || || || || ||||||||||||||||||||||| |||| Sbjct 155237 TTCAACTTCCGGAGGCGCGCGCTTTCTATGGCTTCCAGATCGCCATCGAAAACATTCACT 155178 Query 1456028 CTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACC 1456087 | || | || || || |||| |||||| |||||||| | || || | | | Sbjct 155177 CCGAGATGTATAGTCTTCTCCTCGAGACCTACATCAAGGACTCCACTGAAAAATCCAATC 155118 Query 1456088 TCTTTCGCGCCATCGACACGGTGCC 1456112 | |||||||||||||| || || || Sbjct 155117 TTTTTCGCGCCATCGAAACCGTACC 155093 Score = 123 bits (136), Expect = 4e-22 Identities = 190/268 (71%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 |||||||||||| ||||| || | || || || |||| |||||| |||||||| | Sbjct 155030 CATCGAAAACATTCACTCCGAGATGTATAGTCTTCTCCTCGAGACCTACATCAAGGACTC 154971 Query 1456071 GGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 ||| || | | || |||||||||||||| || || || | || ||||| Sbjct 154970 CACCGAAAAATCCAATCTTTTTCGCGCCATCGAAACCGTACCCTGCGTCGCCCGTAAGGC 154911 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC-GACAC-TTTGCCGAGCGGCTCG 1456188 | ||||| || ||||| || ||||| || | ||||| |||||| | Sbjct 154910 TCAGTGGGCACTGCGCTGGATTGAC-------GCCTCTGAATCATTTGCTGAGCGGATTC 154858 Query 1456189 TCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGC 1456247 ||| ||||| ||||||| || || || ||||| ||||| |||||||||||||| |||| Sbjct 154857 TCGCTTTTGCGTGCGTCGAAGGTATTTTCTTCTCCGGCAGCTTCTGCGCCATCTTCTGGC 154798 Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||||| | ||||| ||||| Sbjct 154797 TCAAGAAGCGCGGTTTGATGCCAGGTCT 154770 Score = 120 bits (132), Expect = 4e-21 Identities = 170/232 (73%), Gaps = 9/232 (4%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| | ||||| | ||||||| |||||||||| | ||| ||||| |||||| || Sbjct 155751 AACCCCGATCGCTTCTGCATGTTCCCGATCCGCTACCCTCAGATTTGGGAGATGTACAAA 155692 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTC-- 1455851 |||| | ||||||||||| ||||| || || |||||||| ||| | | ||| || Sbjct 155691 AAAG-CAGAGGCCTCCTTCTGGACTGCGGAAGAGGTCGATCTC--TCACAAGACGTTCGG 155635 Query 1455852 CACTGGG-TGTC--GCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTT 1455908 || |||| | | || | | ||||||||||| || |||| |||| || ||| || Sbjct 155634 CAATGGGATCACATCCTCACCTCTGACGAGCGCCACTTTATCACCTACGTTCTAGCC-TT 155576 Query 1455909 TTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATG 1455960 |||||||| |||||| |||||| |||||| || ||||| ||||| ||| Sbjct 155575 CTTCGCCGCTTCCGATGGTATCGTGCTCGAGAATCTCGCCGGACGCTTCATG 155524 >seq148002 Length=1402447 Score = 131 bits (144), Expect = 2e-24 Identities = 204/284 (72%), Gaps = 7/284 (2%) Strand=Plus/Plus Query 1455741 ACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCC 1455800 ||||||| | |||| || |||||||||| | ||| ||||| |||||| | |||| || Sbjct 225141 ACCGCTTCTGCATGTTTCCGATCCGCTACCCTCAGATCTGGGAGATGTACAAGAAAG-CC 225199 Query 1455801 GAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA-CACGGTCCACTGGG- 1455858 || ||||| || ||||| || || || || || || | || | | | ||||||| Sbjct 225200 GAAGCCTCTTTCTGGACAGCAGAAGAAGTTGATCTGTCCCAAGATCTCCG-CCACTGGAA 225258 Query 1455859 TG--TCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCG 1455916 || || || | | |||||| || |||||| | | ||||| ||||| ||| ||||||| Sbjct 225259 TGAATCCCTCACCTCCGACGAACGGCATTTCGTAACCCACGTTCTCGC-TTTCTTCGCCG 225317 Query 1455917 CCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGC 1455976 | ||| || ||||| |||||||| || |||||||| ||| ||||| || | | Sbjct 225318 CTTCCGACGGAATCGTTCTAGAGAACCTCGCTGGCCGCTTCATGCGGGAGGTACAGCTCC 225377 Query 1455977 CAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAAC 1456020 | ||||| || || || || || |||||||||||||||||| Sbjct 225378 CGGAGGCGCGCGCTTTCTATGGATTTCAGATCGCCATCGAAAAC 225421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7163425504814138