Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq146110 104 2e-17 seq129792 84.2 2e-11 seq80404 84.2 2e-11 >seq146110 Length=166024 Score = 104 bits (114), Expect = 2e-17 Identities = 221/323 (68%), Gaps = 8/323 (2%) Strand=Plus/Minus Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG 44022 ||| ||||| ||||| || || ||||| |||||||| | || || |||||||| || Sbjct 155030 CATCGAAAACATTCACTCCGAGATGTATAGTCTTCTCCTCGAGACCTACATCAAGGACTC 154971 Query 44023 GCACGAGAAGCATCGATTGTTTAATGCG--ATAGAAACAGTACC-TGCGATTAAACATAA 44079 ||| || ||| | | ||| ||| || ||||| ||||| |||| | | ||| Sbjct 154970 CACCGAAAA--ATCCAATCTTTTTCGCGCCATCGAAACCGTACCCTGCG-TCGCCCGTAA 154914 Query 44080 AGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGC 44139 || | ||||| || ||||| | | ||| || |||| || || || |||| Sbjct 154913 GGCTCAGTGGGCACTGCGCTGGATTGACGCCTCTGAATCATTTGCTGAGCGGATTCTCGC 154854 Query 44140 GTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAA 44198 ||||| || ||||| |||||||| || || | | | |||| |||| || ||| | | Sbjct 154853 TTTTGCGTGCGTCGAAGGTATTTTCTTCTCCGGCAGCTTCTGCG-CCATCTTCTGGCTCA 154795 Query 44199 AGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAG 44258 |||| || ||||||||||| || | || ||||| || ||| | || |||||| || | Sbjct 154794 AGAAGCGCGGTTTGATGCCAGGTCTCACTTTTTCTAACGAGCTCATCTCTCGTGACGAGG 154735 Query 44259 GCTTACATTGCGATTTTGCTTGC 44281 | | || ||||| ||||| ||| Sbjct 154734 GACTCCACTGCGACTTTGCATGC 154712 >seq129792 Length=299331 Score = 84.2 bits (92), Expect = 2e-11 Identities = 369/581 (64%), Gaps = 16/581 (3%) Strand=Plus/Plus Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301 ||| |||||| | ||| |||| || || | || ||| | || ||||||| || ||||| Sbjct 190529 AATAGGAGGACTTAGTGAAGAATTCGCTAAGATATTTTGAAGGGCATTTGCTTCCCGTGT 190588 Query 19302 TTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTA 19361 || | || | |||| | || ||||||| || |||| || | ||||||| Sbjct 190589 TTATCCTCCCCATGTTACAAAGAAATTGGGTATCAAGTATGTGAAGGGTATGCTGCTTTA 190648 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAA 19421 |||||| || || |||||| ||| | | || || | || | ||||| || ||| Sbjct 190649 TGGGCCTCCAGGCACTGGAAAGACACTTTTAGCTCGACAGATTGGAAAATTGCT--CAAT 190706 Query 19422 ACAA--CCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 || || || ||||| || || |||||| | | | || ||||| || | | Sbjct 190707 GGAAGGGAACCAAAGATTGTTAACGGACCTGAAGTACTGAGCAAGTATGTTGGAGAGACC 190766 Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAA---ACGTTTAGGG 19536 || ||||||| | ||| ||| || || ||| |||| ||||| ||| ||| Sbjct 190767 GAGAAAAATGTGAGGGATTTAGTTGTCGATGCAGAACAAGATCAAAAGGCACG---AGGC 190823 Query 19537 CGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGA 19596 ||||| || || | || ||| | |||||| | || || ||||||||| ||| Sbjct 190824 AATCAAAGTGACTTACATGTCATCATATTTGATGAAATTGATGCTATCTGTAAGACTAGA 190883 Query 19597 GGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAA 19650 || || | || | ||| || ||||| | |||| || || || || | || Sbjct 190884 GGGTCAACACAGGATGGCACTGGTGTTCATGATGGTATTGTGAACCAGCTACTCACTAAG 190943 Query 19651 TTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAA 19710 | || |||||||| | || ||| | | ||||||| ||||| || || || Sbjct 190944 ATTGATGGTGTTAATTCCTTAAACAATGTCCTTCTTATTGGAATGACCAACAGGAAAGAT 191003 Query 19711 TTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTA 19770 ||| || || |||||| | || ||||| ||| | | | || || ||| | Sbjct 191004 TTACAGGATGAAGCATTATTAAGGCCTGGTCGATTGAAGGTTCTTGTTGAGATCAACCTT 191063 Query 19771 CCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC 19811 || |||||| ||||||| | ||||| || | |||||||| Sbjct 191064 CCTGATGAAAATGGACGTCTCCAAATTCTACAAATACATAC 191104 >seq80404 Length=676039 Score = 84.2 bits (92), Expect = 2e-11 Identities = 241/365 (66%), Gaps = 12/365 (3%) Strand=Plus/Minus Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301 ||| |||||| | ||| |||| |||||| | || ||||| |||||||||| || ||||| Sbjct 207036 AATAGGAGGACTTAGTGAAGAATTTTCTAAGATATTTCGAAGAGCATTTGCTTCCCGTGT 206977 Query 19302 TTTTTC-TGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTT 19360 || | | | | |||| | | ||||||| || |||| || | |||||| Sbjct 206976 TTATCCCTCCCCATGTTACACATAAATTGGGTATCAAGTATGTGAAGGGTATGCTGCTTT 206917 Query 19361 ATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA--- 19417 ||||||| || || ||||| ||| | | || || | || | ||||| |||| Sbjct 206916 ATGGGCCTCCAGGCACCGGAAAGACACTTTTAGCTCGACAGATTGGAAAATTGCTTAAGG 206857 Query 19418 CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAAT 19477 || || || || ||||| || || |||||| | ||| || ||||| || | Sbjct 206856 GAAGGGAA---CCAAAGATTGTTAACGGACCTGAAGTACTAAGCAAGTATGTTGGAGAGA 206800 Query 19478 CGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGC 19537 | || ||||||| | ||| |||||||| || ||| ||| || || | || ||| Sbjct 206799 CAGAGAAAAATGTGAGGGATTTATTTGCTGATGCAGAACAAG-ACCAATAGGTACGAGGC 206741 Query 19538 G-CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGA 19596 | ||||| || || ||| ||| | |||||| | || || ||||||||| ||| Sbjct 206740 GATCAAAGTGACTTACA---TATCATATTTGATGAAATTGATGCTATCTGTAAGACTAGA 206684 Query 19597 GGTTC 19601 || || Sbjct 206683 GGGTC 206679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396733522989745