Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq98543 102 7e-17 seq44530 87.8 2e-12 seq127156 86.0 5e-12 seq86722 86.0 5e-12 >seq98543 Length=260802 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || |||||||||||||| | | |||| | || || ||||| ||||| Sbjct 27160 GTAGATTCCTTCTGAATATTGTAGTCCGCAAGGGTGCGACCATCCTCAAGCTGCTTACCA 27101 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || ||||||| ||||| || ||||| || | ||||| ||||| ||| || || Sbjct 27100 GCAAAAATGAGGCGCTGCTGGTCCGGTGGAATCCCCTCCTTATCTTGGATTTTAGCCTTA 27041 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||| | | |||||||| || || || | ||| || || || ||| Sbjct 27040 ACATTGTCAATAGTGTCGGAGCTCTCAACTTCAAGTGTGATTGTTTTTCCAGTGAGGGTT 26981 Query 27231 TTCACAAAGATTTGCATAGCT 27251 |||||||| || |||||| || Sbjct 26980 TTCACAAATATCTGCATACCT 26960 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 |||||| ||||| || || || || || || |||| | || ||||||||||| || Sbjct 27389 CGTAGATTCTTTCTGGATGTTATAATCAGCCAGCGTGCGACCATCCTCGAGCTGTTTGCC 27330 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||||||||| ||||| || || | ||||| ||||| ||||| || Sbjct 27329 GGCAAAGATGAGACGCTGCTGATCAGGAGGAATGCCCTCCTTATCCTGAATCTTCGCCTT 27270 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | | || | || || | | ||| || || || || || | || || || ||||| Sbjct 27269 CACGTTATCAATTGTATCAGAGCTTTCTACCTCAAGGGTGATGGTCTTTCCAGTAAGAGT 27210 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||||||||||||||| Sbjct 27209 CTTCACAAAGATTTGCAT 27192 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || |||||||||||||| | | |||| | || || ||||| ||||| Sbjct 28672 GTAGATTCCTTCTGAATATTGTAGTCCGCAAGGGTGCGACCATCCTCAAGCTGCTTACCA 28613 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || ||||||| ||||| || ||||| || | ||||| ||||| ||| || || Sbjct 28612 GCAAAAATGAGGCGCTGCTGGTCCGGTGGAATCCCCTCCTTATCTTGGATTTTAGCCTTA 28553 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||| | | |||||||| || || || | || || || || ||| Sbjct 28552 ACATTGTCAATAGTGTCGGAGCTCTCAACTTCAAGTGTGATTGTCTTTCCAGTGAGGGTT 28493 Query 27231 TTCACAAAGATTTGCATAGCT 27251 |||||||| || |||||| || Sbjct 28492 TTCACAAATATCTGCATACCT 28472 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || |||||||||||||| | | |||| | || || ||||| ||||| Sbjct 116278 GTAGATTCCTTCTGAATATTGTAGTCCGCAAGGGTGCGACCATCCTCAAGCTGCTTACCA 116219 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || ||||||| ||||| || ||||| || | ||||| ||||| ||| || || Sbjct 116218 GCAAAAATGAGGCGCTGCTGGTCCGGTGGAATCCCCTCCTTATCTTGGATTTTAGCCTTA 116159 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||| | | |||||||| || || || | || || || || ||| Sbjct 116158 ACATTGTCAATAGTGTCGGAGCTCTCAACTTCAAGTGTGATTGTCTTTCCAGTGAGGGTT 116099 Query 27231 TTCACAAAGATTTGCATAGCT 27251 |||||||| || |||||| || Sbjct 116098 TTCACAAATATCTGCATACCT 116078 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| || || || || || || |||| | || ||||||||||| ||| Sbjct 28900 GTAGATTCTTTCTGGATGTTATAATCAGCCAGCGTGCGTCCATCCTCGAGCTGTTTGCCG 28841 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| ||||| || || | ||||| ||||| ||||| ||| Sbjct 28840 GCAAAGATGAGACGCTGCTGATCAGGAGGAATGCCCTCCTTATCCTGAATCTTCGCCTTC 28781 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | | ||| || || || || || | || || || ||||| Sbjct 28780 ACGTTATCAATTGTATCAGAGCTTTCTACCTCAAGGGTGATGGTCTTTCCAGTAAGAGTC 28721 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||||||||| Sbjct 28720 TTCACAAAGATTTGCAT 28704 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || || || || || |||| | || ||||||||||| ||| Sbjct 116506 GTCGATTCTTTCTGGATGTTATAATCAGCCAGCGTGCGACCATCCTCGAGCTGTTTGCCG 116447 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| ||||| || || | ||||| ||||| ||||| ||| Sbjct 116446 GCAAAGATGAGACGCTGCTGATCAGGAGGAATGCCCTCCTTATCCTGAATCTTCGCCTTC 116387 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | | ||| || || || || || | || || || ||||| Sbjct 116386 ACGTTATCAATTGTATCAGAGCTTTCTACCTCAAGGGTGATGGTCTTTCCAGTAAGAGTC 116327 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||||||||| Sbjct 116326 TTCACAAAGATTTGCAT 116310 >seq44530 Length=310530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| ||||| || | | |||| | || || |||||||| || Sbjct 30350 GTGGATTCCTTCTGAATGTTGTAATCCGCAAGGGTGCGGCCATCCTCAAGCTGTTTTCCA 30409 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | ||| ||||| ||||| | ||||| || || |||||| || Sbjct 30410 GCGAAGATGAGCCTCTGCTGATCTGGCGGTATCCCCTCCTTGTCCTGGATCTTTGCCTTA 30469 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||||| | || || || ||||| || | ||| || || || ||| Sbjct 30470 ACGTTATCAATTGTGTCTGAGCTCTCCACCTCAAGAGTGATGGTTTTCCCAGTAAGTGTT 30529 Query 27231 TTCACAAAGATTTGCATA 27248 |||||||| || |||||| Sbjct 30530 TTCACAAATATCTGCATA 30547 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| ||||| || | | |||| | || || |||||||| || Sbjct 24165 GTGGATTCCTTCTGAATGTTGTAATCAGCAAGGGTGCGGCCATCCTCAAGCTGTTTTCCC 24224 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | ||| ||||| ||||| | ||||| || || |||||| ||| Sbjct 24225 GCGAAGATGAGCCTCTGCTGATCTGGCGGTATCCCCTCCTTGTCCTGGATCTTTGCCTTC 24284 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||||| | || || || ||||| || | ||| || || || ||| Sbjct 24285 ACGTTATCAATTGTGTCTGAGCTCTCCACCTCAAGAGTGATGGTTTTCCCAGTAAGTGTT 24344 Query 27231 TTCACAAAGAT 27241 |||||||| || Sbjct 24345 TTCACAAATAT 24355 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || |||||||||||||| || | |||| | || || || ||||| || Sbjct 30578 GTAGATTCCTTCTGAATATTGTAGTCTGCCAGGGTGCGGCCATCCTCCAGTTGTTTGCCA 30637 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | || || || || || || | ||||| || || ||| ||| |||| Sbjct 30638 GCAAAGATCAACCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATTTTGGCTTTC 30697 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||| || | | || || || || || |||| ||| ||||| || || Sbjct 30698 ACGTTATCAATAGTATCAGAGCTCTCCACCTCAAGGGTGATAGTTTTCCCCGTAAGTGTC 30757 Query 27231 TTCACAAAGATTTGCATA 27248 |||||||| || |||||| Sbjct 30758 TTCACAAATATCTGCATA 30775 >seq127156 Length=393785 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||| || | | |||| | || || ||||| || || Sbjct 285185 GTGGACTCCTTCTGTATGTTGTAATCAGCAAGGGTGCGACCATCCTCCAGCTGCTTGCCA 285126 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||||||||| || || | || || ||||| |||||| |||| Sbjct 285125 GCAAAGATCAGTCTCTGTTGATCTGGAGGAATGCCTTCCTTATCCTGGATCTTTGCTTTC 285066 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||| || || || || |||| ||||| || |||||| Sbjct 285065 ACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTCTTGCCGGTAAGAGTT 285006 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||||||||| Sbjct 285005 TTAACAAAGATTTGCAT 284989 >seq86722 Length=38260 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||| | || || || || |||||||| | | | || | || || ||||| || ||| Sbjct 14526 GTAAACTCCTTCTGGATGTTGTAGTCTGCAAGGGTACGACCATCCTCCAGCTGCTTGCCG 14585 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | || ||||| || || | ||||||||||| || ||| ||| Sbjct 14586 GCGAAGATCAACCTTTGCTGATCTGGAGGGATGCCCTCTTTATCTTGAATTTTGGCCTTC 14645 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||||| | |||||| ||||| || |||| || || || ||||| Sbjct 14646 ACGTTGTCGATGGTGTCTGAGCTTTCAACCTCTAGGGTGATAGTCTTACCGGTGAGAGTC 14705 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 14706 TTCACAAAGATCTGCAT 14722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424161974033688