Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq133767 125 9e-24 seq57680 123 3e-23 seq124605 107 2e-18 seq146110 98.7 1e-15 >seq133767 Length=751646 Score = 125 bits (138), Expect = 9e-24 Identities = 305/461 (66%), Gaps = 6/461 (1%) Strand=Plus/Plus Query 11432 AGACCCACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATA 11491 |||||||| || ||| |||||| | || || | || | ||| ||| ||||| Sbjct 745281 AGACCCACCTG--TCT----ATCAAACCTTCCAGGCCTTAGCAATGCGGAATCCAGGATG 745334 Query 11492 TCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATC 11551 || |||| ||||| || |||| ||| | || || || | ||||| |||||||| Sbjct 745335 TCTGCGCGGTTAGTAGCTGCAAGAACTATGATACCTGTATTTCCTTCAAAACCATCCATT 745394 Query 11552 TCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCA 11611 || || | | || || | ||||||||||| |||||||| | | ||| | Sbjct 745395 TCAGTCAAAAGCTGGTTCAGAGTTTGTTCTCTTTCATCATTCCCCCCTCCAATACCCGTT 745454 Query 11612 CTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCG 11671 | | |||| | || || ||||| || ||||||| ||| |||||||| ||| ||| || Sbjct 745455 CCTCTTTGCCTTCCAACAGCATCTATTTCATCAACGAATACAATACAAGGTGCATTCTCT 745514 Query 11672 CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACA 11731 || | | || ||||| ||||||| | ||| || ||||||||||||||||||||| Sbjct 745515 TTAGCCTTCTTGAAAAGATCACGAACCCGTGAGGCGCCAACACCAACAAACATCTCCACA 745574 Query 11732 AAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCG 11791 || | | | ||| || || || ||| | |||||| || ||||| ||| Sbjct 745575 AACTCAGATCCTGAGATAGAGAAAAAGGGAACACCAGCTTCACCAGCAATGGCCTTGGCA 745634 Query 11792 AGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCA 11851 || || |||||||| ||||| || ||| |||||| | ||| || || ||| Sbjct 745635 AGTAGAGTCTTTCCAGTACCAGGAGGACCAATGAGAAGAACACCTTTAGGTATACGAGCA 745694 Query 11852 CCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 || || | | || || |||| ||| ||||| ||||| Sbjct 745695 CCGACAGCAGTAAACCTTTCTGGTTTCTTAAGAAACTCCAC 745735 Score = 123 bits (136), Expect = 3e-23 Identities = 258/383 (67%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 11432 AGACCCACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATA 11491 |||||||| || ||| |||||| | || || | || | ||| ||| ||||| Sbjct 738220 AGACCCACCTG--TCT----ATCAAACCTTCCAGGCCTTAGCAATGCGGAATCCAGGATG 738273 Query 11492 TCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATC 11551 || |||| ||||| || |||| ||| | || || || | ||||| |||||||| Sbjct 738274 TCTGCGCGGTTAGTAGCTGCAAGAACTATGATACCTGTATTTCCTTCAAAACCATCCATT 738333 Query 11552 TCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCA 11611 || || | | || || | ||||||||||| |||||||| | | ||| | Sbjct 738334 TCAGTCAAAAGCTGGTTCAGAGTTTGTTCTCTTTCATCATTCCCCCCTCCAATACCCGTT 738393 Query 11612 CTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCG 11671 | | |||| | || || ||||| || ||||||| ||| |||||||| ||| ||| || Sbjct 738394 CCTCTTTGCCTTCCAACAGCATCTATTTCATCAACGAATACAATACAAGGTGCATTCTCT 738453 Query 11672 CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACA 11731 || | | || ||||| ||||||| | ||| || ||||||||||||||||||||| Sbjct 738454 TTAGCCTTCTTGAAAAGATCACGAACCCGTGAGGCGCCAACACCAACAAACATCTCCACA 738513 Query 11732 AAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCG 11791 || | | | ||| || || || ||| | |||||| || ||||| ||| Sbjct 738514 AACTCAGATCCTGAGATAGAGAAAAAGGGAACACCAGCTTCACCAGCAATGGCCTTGGCA 738573 Query 11792 AGGAGGGTCTTTCCCGTACCTGG 11814 || || |||||||| ||||| || Sbjct 738574 AGTAGAGTCTTTCCAGTACCAGG 738596 >seq57680 Length=1257 Score = 123 bits (136), Expect = 3e-23 Identities = 258/383 (67%), Gaps = 6/383 (2%) Strand=Plus/Minus Query 11432 AGACCCACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATA 11491 |||||||| || ||| |||||| | || || | || | ||| ||| ||||| Sbjct 1215 AGACCCACCTG--TCT----ATCAAACCTTCCAGGCCTTAGCAATGCGGAATCCAGGATG 1162 Query 11492 TCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATC 11551 || |||| ||||| || |||| ||| | || || || | ||||| |||||||| Sbjct 1161 TCTGCGCGGTTAGTAGCTGCAAGAACTATGATACCTGTATTTCCTTCAAAACCATCCATT 1102 Query 11552 TCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCA 11611 || || | | || || | ||||||||||| |||||||| | | ||| | Sbjct 1101 TCAGTCAAAAGCTGGTTCAGAGTTTGTTCTCTTTCATCATTCCCCCCTCCAATACCCGTT 1042 Query 11612 CTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCG 11671 | | |||| | || || ||||| || ||||||| ||| |||||||| ||| ||| || Sbjct 1041 CCTCTTTGCCTTCCAACAGCATCTATTTCATCAACGAATACAATACAAGGTGCATTCTCT 982 Query 11672 CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACA 11731 || | | || ||||| ||||||| | ||| || ||||||||||||||||||||| Sbjct 981 TTAGCCTTCTTGAAAAGATCACGAACCCGTGAGGCGCCAACACCAACAAACATCTCCACA 922 Query 11732 AAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCG 11791 || | | | ||| || || || ||| | |||||| || ||||| ||| Sbjct 921 AACTCAGATCCTGAGATAGAGAAAAAGGGAACACCAGCTTCACCAGCAATGGCCTTGGCA 862 Query 11792 AGGAGGGTCTTTCCCGTACCTGG 11814 || || |||||||| ||||| || Sbjct 861 AGTAGAGTCTTTCCAGTACCAGG 839 >seq124605 Length=252891 Score = 107 bits (118), Expect = 2e-18 Identities = 250/374 (67%), Gaps = 10/374 (3%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| || ||||||||||||||||| | Sbjct 104574 AAATCCATCCATCTCAGTCAAGAGCTGATTAATGGTCTGTTCTCTCTCATCATTACC--- 104630 Query 11599 CATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 |||| ||||| | | ||| | || |||||||||||||| ||||| || ||||| Sbjct 104631 ACCACCAAGCCCAGCCCCTCTCTGCCTTCCAACCGCATCAATCTCGTCAATAAAAACAAT 104690 Query 11656 ACATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 ||| || |||||| || | ||||| | ||| | |||||| || || || Sbjct 104691 ACAGGG--AGCTTTCGCCTTTGCCTTCTCAAACAAATCCCTCACCCTTGAAGCTCCAACT 104748 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773 |||||||| | || ||||| | || |||| ||| | ||| || ||| | || Sbjct 104749 CCAACAAAAAGTTCAACAAACTCTGAAGCAGCACACGAAAAGAAGGGCACACCAGCCTCG 104808 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCG 11833 || |||| || || || || || ||||| || || || ||| || | | |||| Sbjct 104809 CCGGCGACCGCCCGAGCTAGCAGCGTCTTCCCAGTTCCCGGCGGCCCAACCAAAAGGCAA 104868 Query 11834 CCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACA 11893 ||| ||| ||||| |||||| | ||| | || || | ||| | |||||| || Sbjct 104869 CCTTTGGGAATCTTAGCACCAAGAGCCGTGTATTTATCAGGATTCTTCAAAAAATCGACG 104928 Query 11894 ATCTCTTCAAGTTC 11907 | |||| ||| || Sbjct 104929 ACTTCTTGAAGCTC 104942 Score = 107 bits (118), Expect = 2e-18 Identities = 250/374 (67%), Gaps = 10/374 (3%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| || ||||||||||||||||| | Sbjct 153907 AAATCCATCCATCTCAGTCAAGAGCTGATTAATGGTCTGTTCTCTCTCATCATTACC--- 153963 Query 11599 CATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 |||| ||||| | | ||| | || |||||||||||||| ||||| || ||||| Sbjct 153964 ACCACCAAGCCCAGCCCCTCTCTGCCTTCCAACCGCATCAATCTCGTCAATAAAAACAAT 154023 Query 11656 ACATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 ||| || |||||| || | ||||| | ||| | |||||| || || || Sbjct 154024 ACAGGG--AGCTTTCGCCTTTGCCTTCTCAAACAAATCCCTCACCCTTGAAGCTCCAACT 154081 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773 |||||||| | || ||||| | || |||| ||| | ||| || ||| | || Sbjct 154082 CCAACAAAAAGTTCAACAAACTCTGAAGCAGCACACGAAAAGAAGGGCACACCAGCCTCG 154141 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCG 11833 || |||| || || || || || ||||| || || || ||| || | | |||| Sbjct 154142 CCGGCGACCGCCCGAGCTAGCAGCGTCTTCCCAGTTCCCGGCGGCCCAACCAAAAGGCAA 154201 Query 11834 CCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACA 11893 ||| ||| ||||| |||||| | ||| | || || | ||| | |||||| || Sbjct 154202 CCTTTGGGAATCTTAGCACCAAGAGCCGTGTATTTATCAGGATTCTTCAAAAAATCGACG 154261 Query 11894 ATCTCTTCAAGTTC 11907 | |||| ||| || Sbjct 154262 ACTTCTTGAAGCTC 154275 >seq146110 Length=166024 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || |||||| ||||| || || || || || || || || || |||||| Sbjct 154716 GCAAAGTCGCAGTGGAGTCCCTCGTCACGAGAGATGAGCTCGTTAGAAAAAGTGAGACCT 154775 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||| |||||||| | ||| | || |||||||| ||||||||||| ||| Sbjct 154776 GGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAAATA 154835 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 || || || |||||||| || | || || || || || || ||| || |||| | Sbjct 154836 CCTTCGACGCACGCAAAAGCGAGAATCCGCTCAGCAAATGATTCAGA---GGCGTCAATC 154892 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 || || |||||| | ||||| | | || ||||| |||| |||||| Sbjct 154893 CAGCGCAGTGCCCACTGAGCCTTACGGGCGACGCAGGGTACGGTTTCGATGGC 154945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626861120690400