Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq98543 93.3 3e-14 seq94009 86.0 4e-12 seq127156 84.2 2e-11 >seq98543 Length=260802 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || || ||||| || || || |||| || || ||| || Sbjct 115626 ATGCAGATTTTTGTGAAGACCCTAACTGGTAAGACGATCACTCTTGAAGTTGAGAGCTCC 115685 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||||||||| |||| ||| | Sbjct 115686 GACACCATAGACAAT--GTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCGGACC 115743 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| ||||||||||||| || || || | || |||| |||| | | | ||||| | Sbjct 115744 AGCAAAGGTTAATTTTTGCTGGGAAGCAGCTTGAGGACGGCCGCACCCTTGCAGATTATA 115803 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 |||| ||||| ||| || | ||| | || ||||| Sbjct 115804 ACATTCAAAAGGAGTCTACCCTCCATCTTGTGTTGCG 115840 >seq94009 Length=1666 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| ||||| || ||||| || ||||| | || || || || | Sbjct 506 AATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATTACTCTCGACGTGGAGAGTTC 565 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || | ||||| | | |||||| | |||||||| || | || ||| Sbjct 566 CGACACCATCGA-AATCGTTAAGTCAAAAA-TCCAGGACAAAGAGGGCATCCCACCGGAC 623 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | ||||||||||||||||| | || |||| || | | | ||||| ||| Sbjct 624 CAGCAGAGGCTGATTTTTGCCGGAAAACAGCTTGAGGACGGCCGAACCCTCTCCGACTAC 683 Query 27967 AACATCCAAAAAGAG 27981 |||||||| |||||| Sbjct 684 AACATCCAGAAAGAG 698 >seq127156 Length=393785 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| ||||||||||| || || || | || || |||||| | Sbjct 284761 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACGATCACCCTCGAGGTGGAAAGCTCT 284820 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || |||| || || ||||| ||||| || ||| | || ||| | Sbjct 284821 GATACCATCGACAA--CGTTAAGGCCAAAATCCAGGACAAGGAGGGTATCCCACCGGATC 284878 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| || || || | || || | |||| | | |||| |||| Sbjct 284879 AGCAAAGGTTGATTTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCCGACTACA 284938 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||| ||| ||||| | ||| | ||| |||| || || Sbjct 284939 ACATTCAAAAGGAGTCAACTCTGCATCTTGTTCTCCGTCTGCGGGGAGG 284987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355215529899123