Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020 17-04-04] 149,149 sequences; 2,687,664,729 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq94009 96.9 3e-15 seq44530 89.7 4e-13 >seq94009 Length=1666 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || || |||| || ||||| |||| ||||||||||| || ||||| Sbjct 698 CTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGTTTTCCGGCAAA 639 Query 39153 TATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 || || | |||||||| ||||||| | || |||||||||| |||||| || | | || Sbjct 638 AATCAGCCTCTGCTGGTCCGGTGGG-ATGCCCTCTTTGTCCTGGATTTT-TGACTTAACG 581 Query 39212 -TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | | || ||| ||||||||| | || || | || || || || ||||| Sbjct 580 ATTTCGATGGTGTCGGAACTCTCCACGTCGAGAGTAATGGTCTTGCCAGTGAGGGTTTTG 521 Query 39271 ACAAAGATTTGCAT 39284 |||||||| ||||| Sbjct 520 ACAAAGATCTGCAT 507 >seq44530 Length=310530 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/225 (70%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 39066 TAAG-CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTC 39124 |||| || | ||| | |||||| || || || || || |||||||| ||||| || | Sbjct 30783 TAAGACGAAGCACAAGATGTAGGGTAGATTCCTTCTGGATGTTATAATCAGCAAGGGTAC 30842 Query 39125 GTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCT 39184 | | || ||||||||||| || |||||||| || | |||||||| | ||| | || || Sbjct 30843 GGCCATCCTCAAGCTGTTTTCCAGCAAATATCAGCCTTTGCTGGTCCGGGGGAATGCCCT 30902 Query 39185 CTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCC 39240 | |||||| |||||| || | ||| | | | || || ||| |||||| || Sbjct 30903 CCTTGTCCTGGATTTTAGCCTTCA-CGTTGTCTATAGTGTCAGAGCT---CTCCACCTCA 30958 Query 39241 ACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | ||||| | ||||| || || || || ||||| || |||||| Sbjct 30959 AGGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAATATCTGCATC 31003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428764792009037