Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq33 107 2e-18 seq652 86.0 7e-12 seq617 86.0 7e-12 >seq33 Length=1606457 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || || ||||| | || | ||| || | |||| |||| ||||||||||||| ||| ||| Sbjct 1148410 CCCCCTTGATCAACATAACGAGCAGTATCATTAAAAACCCTCAACATTGGAACAATGCCA 1148469 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 || |||| ||||| ||||| |||||| || ||| | ||||||||||| | ||| Sbjct 1148470 TTAGATGTCCCATTTGTCCCACGGATATAACTACCAGTTGCACGAATATTGTGAGCAGAT 1148529 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | || || || || || ||| || | || ||| ||||| |||||||| || Sbjct 1148530 ATGCCAATTCCTCCAGCAGATTTGCTTATAACAGCACATTCCTTTAAAGTATCATATATT 1148589 Query 54365 CCCTCTATACTATCATCCATCATG 54388 ||||| || |||||||| ||||| Sbjct 1148590 CCCTCAATGCTATCATCTTTCATG 1148613 >seq652 Length=146776 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||| || ||||||||||| || |||||||| || || ||||| || ||| | | || Sbjct 110168 AGTGCCTGCATTAAATAACGTTGGAGAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 110109 Query 54484 GTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 54542 || || || | | || || ||||| | ||| || ||||| || || || | ||| | Sbjct 110108 ATATGTTCTGAGAACAGAATCAATATCATCCTTG-TGGATTCCAACAGCTACTCTCATCA 110050 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 ||||||||| || ||||| || | || | |||||| | ||| ||| | || | Sbjct 110049 GCATGTGCTGTGGCCTTTCTACTACTTTTCCAGAAACTTTCAGGAGGTAAGATCTCTCAA 109990 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||| ||||| |||||||||| || |||||| | || ||||| || Sbjct 109989 GAGTCTTAAAGCCAAAATAGTCATAATCAAAGTCCCTGTCATAAATTAT 109941 >seq617 Length=160175 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| || ||||| | || | ||| || | |||| | || |||| ||| || | ||| || Sbjct 53369 TCCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCTCAGCATCGGCACAATGCC 53310 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| || | ||||| ||||| ||||| || || ||||||| |||||| || ||| Sbjct 53309 ATTAGAAGTTCCATTTGTCCCACGAATATAACTACCCGTGGCACGTATATTATGAACTGA 53250 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || || || | || ||| || | || |||||||| Sbjct 53249 AACACCAATTCCTCCAGCAGACTTGCTTATAACAGCACATTCCTTCAGAGTGTCATAGAT 53190 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 ||||| ||||||||||| ||||| | || |||||||| Sbjct 53189 TCCCTCAATACTATCATCTTTCATGCAGACAAGGAAACAGCT 53148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593125525778160