Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1029 109 8e-19 seq680 109 8e-19 seq40 104 4e-17 seq121 86.0 9e-12 >seq1029 Length=71094 Score = 109 bits (120), Expect = 8e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || || |||||||| || ||||||||||| | |||||||| ||||| || || Sbjct 12383 CAGGACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTTGCTGGAAAGCAGTTG 12324 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| ||||||| ||| ||||| || ||||||||||| ||||| ||||| ||||| Sbjct 12323 GAAGATGGTCGAACCCTAGCTGATTACAACATTCAAAAAGAGTCAACACTGCATCTGGTT 12264 Query 124749 TTA 124751 ||| Sbjct 12263 TTA 12261 >seq680 Length=135211 Score = 109 bits (120), Expect = 8e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || || |||||||| || ||||||||||| | ||||| || ||||| || || Sbjct 22487 CAGGACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTCGCTGGAAAGCAGTTG 22546 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 |||||| ||||||| || | ||||| || ||||||||||| ||||| ||||| ||||| Sbjct 22547 GAGGATGGTCGAACCTTGGCTGATTACAACATTCAAAAAGAGTCAACGCTGCATCTGGTT 22606 Query 124749 TTA 124751 ||| Sbjct 22607 TTA 22609 >seq40 Length=1536145 Score = 104 bits (114), Expect = 4e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || || || ||||| || ||||| |||||||| |||||||| || ||||| || Sbjct 682120 CAGGACAAGGAGGGGATACCCCCAGATCAGCAAAGGCTGATTTTTGCTGGGAAACAGTTG 682179 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| ||||||| ||| ||||| |||||||||||||| || ||| | || ||||| Sbjct 682180 GAAGATGGTCGAACTCTAGCTGATTACAATATTCAAAAAGAGTCGACTCTTCACCTGGTT 682239 Query 124749 TT 124750 || Sbjct 682240 TT 682241 >seq121 Length=770561 Score = 86.0 bits (94), Expect = 9e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || ||||| || || || | ||| |||| ||| | Sbjct 403669 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTTGAGAGCTCA 403610 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | ||| || ||||| |||||||| || || ||||||||||| Sbjct 403609 -GACACCATTGATAACGTGAAAGCTAAGATTCAGGATAAAGAGGGGATCCCACCTGATCA 403551 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || ||||| || || || | || ||| | || || | | ||| || || Sbjct 403550 GCAGCGCCTGATCTTTGCTGGGAAGCAGCTGGACGATGGCCGCACCCTGGCAGACTACAA 403491 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||||| || || || |||| ||||| Sbjct 403490 CATCCAAAAGGAGTCCACGCTGCACCTGGTT 403460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754697550505600