Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24]
80,317 sequences; 556,480,649 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq1029 109 8e-19
seq680 109 8e-19
seq40 104 4e-17
seq121 86.0 9e-12
>seq1029
Length=71094
Score = 109 bits (120), Expect = 8e-19
Identities = 98/123 (80%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688
|| || || || |||||||| || ||||||||||| | |||||||| ||||| || ||
Sbjct 12383 CAGGACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTTGCTGGAAAGCAGTTG 12324
Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748
|| ||| ||||||| ||| ||||| || ||||||||||| ||||| ||||| |||||
Sbjct 12323 GAAGATGGTCGAACCCTAGCTGATTACAACATTCAAAAAGAGTCAACACTGCATCTGGTT 12264
Query 124749 TTA 124751
|||
Sbjct 12263 TTA 12261
>seq680
Length=135211
Score = 109 bits (120), Expect = 8e-19
Identities = 98/123 (80%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688
|| || || || |||||||| || ||||||||||| | ||||| || ||||| || ||
Sbjct 22487 CAGGACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTCGCTGGAAAGCAGTTG 22546
Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748
|||||| ||||||| || | ||||| || ||||||||||| ||||| ||||| |||||
Sbjct 22547 GAGGATGGTCGAACCTTGGCTGATTACAACATTCAAAAAGAGTCAACGCTGCATCTGGTT 22606
Query 124749 TTA 124751
|||
Sbjct 22607 TTA 22609
>seq40
Length=1536145
Score = 104 bits (114), Expect = 4e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688
|| || || || || ||||| || ||||| |||||||| |||||||| || ||||| ||
Sbjct 682120 CAGGACAAGGAGGGGATACCCCCAGATCAGCAAAGGCTGATTTTTGCTGGGAAACAGTTG 682179
Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748
|| ||| ||||||| ||| ||||| |||||||||||||| || ||| | || |||||
Sbjct 682180 GAAGATGGTCGAACTCTAGCTGATTACAATATTCAAAAAGAGTCGACTCTTCACCTGGTT 682239
Query 124749 TT 124750
||
Sbjct 682240 TT 682241
>seq121
Length=770561
Score = 86.0 bits (94), Expect = 9e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| || ||| | ||||| || || ||||| || || || | ||| |||| ||| |
Sbjct 403669 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTTGAGAGCTCA 403610
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || ||| ||| | ||| || ||||| |||||||| || || |||||||||||
Sbjct 403609 -GACACCATTGATAACGTGAAAGCTAAGATTCAGGATAAAGAGGGGATCCCACCTGATCA 403551
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| | || || ||||| || || || | || ||| | || || | | ||| || ||
Sbjct 403550 GCAGCGCCTGATCTTTGCTGGGAAGCAGCTGGACGATGGCCGCACCCTGGCAGACTACAA 403491
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTT 124748
|| ||||| || || || |||| |||||
Sbjct 403490 CATCCAAAAGGAGTCCACGCTGCACCTGGTT 403460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 754697550505600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |