Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq474 125 8e-24 seq1025 116 4e-21 seq13 116 4e-21 seq129 107 2e-18 seq27 105 8e-18 seq464 102 9e-17 seq121 96.9 4e-15 seq181 84.2 2e-11 seq564 82.4 9e-11 seq10 82.4 9e-11 >seq474 Length=218880 Score = 125 bits (138), Expect = 8e-24 Identities = 147/196 (75%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| || || || || |||| || |||||||| || ||||| Sbjct 25110 CTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 25169 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | ||| | || |||||||||| ||| || |||| ||| Sbjct 25170 GATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 25228 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || ||||| |||| ||||| || || ||||| || ||||| | Sbjct 25229 TGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTCTTCCCCGTCAGGGTCTTCA 25288 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 25289 CGAAGATCTGCATGTT 25304 >seq1025 Length=71329 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| || ||||| |||| || |||||||| || ||||| Sbjct 8469 CTCCTTCTGTATGTTGTAGTCAGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 8410 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 8409 GATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATT 8350 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || ||||| || | ||||| || || ||||| || ||||| || Sbjct 8349 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTCTTCAC 8290 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 8289 GAAGATCTGCAT 8278 >seq13 Length=2550137 Score = 116 bits (128), Expect = 4e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || ||||| || || ||||| Sbjct 1356628 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAA 1356687 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 1356688 GATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 1356746 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| |||||||| |||||||| || ||||| | Sbjct 1356747 TGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCA 1356806 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 1356807 CGAAGATCTGCATCTT 1356822 >seq129 Length=753513 Score = 107 bits (118), Expect = 2e-18 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || |||||||||||| || || || ||||| || ||| | || || Sbjct 556246 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTATAGTCCGCCAGCGTGCGCCCATCCTCC 556305 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 ||||| |||||||| || ||||| | |||||| || | || | || |||||||||| || Sbjct 556306 AGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCC-TG 556364 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 | | || | || | | | | |||||| |||| || || || | |||||||| Sbjct 556365 AATCTTAGCCTTCACATTATCAATCGTGTCGGAGCTC---TCAACTTCCAGAGTGATGGT 556421 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || ||||| |||||||| ||||| Sbjct 556422 CTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 556454 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 7/195 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||||||||||| ||| || | || || || || || ||||| || Sbjct 556491 CTCTTTCTGGATGTTGTAATCAGCCAAAGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAA 556550 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | ||||||||| | || | || |||||||| | ||| | || | || | Sbjct 556551 GATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGT-CTTGAATCTTAGCCTTCACAT 556609 Query 43111 TCGCCACCGTGTC--GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | | |||||| |||| || || || | |||||||| ||||| || || ||||| Sbjct 556610 TATCAATCGTGTCGAGCTC---TCAACTTCCAGGGTGATGGTCTTGCCAGTAAGGGTCTT 556666 Query 43169 TACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 556667 CACAAAGATCTGCAT 556681 >seq27 Length=1763170 Score = 105 bits (116), Expect = 8e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || |||||||| || || || || || |||| || |||||||| || || || Sbjct 581087 TCCTTCTGGATATTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 581028 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||||||||| | || | || |||||||| | ||| | |||| | | ||| Sbjct 581027 ATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGT-CTTGAATCTTTGCCTTAACGTT 580969 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || ||| || ||||| || | |||||||| ||||| || || ||||| || Sbjct 580968 GTCGATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTGAC 580909 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 580908 GAAGATCTGCAT 580897 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| ||||| ||||| |||||||| ||||| || || | || || Sbjct 581561 CACCAGATGAAGAGTGGATTCCTTCTGAATGTTGTAATCCGCCAGGGTGCGGCCATCCTC 581502 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||||||||| || || | ||||||||||| | || | | |||||||||| | Sbjct 581501 CAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCCTTGTCC-T 581443 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 || |||| | || | | | | ||| || |||| || || || | ||||||| Sbjct 581442 GAATTTTGGCCTTCACATTGTCAATCGTATCCGAGCTC---TCGACCTCAAGGGTGATGG 581386 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || || || |||||||| ||||| Sbjct 581385 TCTTCCCAGTGAGGGTTTTGACAAAGATCTGCAT 581352 >seq464 Length=225985 Score = 102 bits (112), Expect = 9e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| |||||| ||||||||||| || || || |||| |||| || Sbjct 137611 CACCAGATGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGCGAGCGTCCTGCCGTCCTC 137670 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || || | ||||||||| | ||| | | |||||||||| Sbjct 137671 AAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGAATCCCCTCCTTGTCCTG 137730 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGT 43150 ||| || || | | | | || || ||| ||||| |||| ||||| || Sbjct 137731 GATCTTCGCCTTCACATTATCAATGGTATC---CGAACTCTCCACTTCGAGGGTGATCGT 137787 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || ||||| ||||| |||||||| Sbjct 137788 CTTTCCCGTAAGGGTCTTCACAAATATTTGCAT 137820 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/196 (72%), Gaps = 9/196 (5%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || || ||||| || || || || |||| || || ||||| || ||||| Sbjct 137857 CTCCTTTTGGATGTTATAATCGGCGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 137916 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || ||||| ||| ||| || |||| ||| Sbjct 137917 GATCAGGCGCTGCTGGTCCG-GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGA-CGT 137974 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| |||| || || || | ||||| || ||||| || || |||| Sbjct 137975 TGTCGATCGTGTCCGAGCTC---TCGACCTCCAAGGTGATCGTCTTGCCGGTGAGGGTCT 138031 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||||||||| Sbjct 138032 TGACGAAGATTTGCAT 138047 >seq121 Length=770561 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| || | |||| || | ||| |||||| || || |||||||| || Sbjct 403215 CCGCCTCTTAATCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGTATGTTGTAATCTGCT 403274 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || |||||||| ||||| || || || ||||||||||| | | Sbjct 403275 AATGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAAATCAGGCGCTGCTGGTCAGGTGCG 403334 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | || |||||||||| ||| || ||| | || | | ||||| |||| || Sbjct 403335 ATGCCCTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCTGAGCTC---TCA 403391 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||| || || || || ||||| || ||||| ||||| Sbjct 403392 ACCTCAAGAGTGATGGTCTTCCCTGTAAGGGTCTTGACGAAGATCTGCAT 403441 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| || | ||| ||||| ||||| |||||||| ||||| || || | Sbjct 402999 CGCAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTGCA 403058 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| ||||| || || || |||||||| || | | | | ||||| Sbjct 403059 TCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGATCCACAGAGATTCCTTCCTTA 403118 Query 43089 TCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCGACCGT 43144 ||| ||| | |||| |||| | | | |||||| ||| ||||| || | || Sbjct 403119 TCC-TGAATCTTTGCCTTGACATTATCGATGGTGTCGGAGCTC---TCCACCTCCAAAGT 403174 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || ||||| | |||||||||||||| ||||| Sbjct 403175 GATCGTCTTCCCCGTCAAAGTCTTTACAAAGATCTGCAT 403213 >seq181 Length=580914 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60053 TATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 ||| ||||| | || || || ||| ||||||||| |||| |||||||||||||||| Sbjct 494319 TATTAAAAAATATCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGA 494260 Query 60113 ATACTCACCACTATACTAC 60131 ||||||||||||||||||| Sbjct 494259 ATACTCACCACTATACTAC 494241 >seq564 Length=183511 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| | || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 140293 AAAAATTAACGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 140234 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 140233 TCACCACTATACTAC 140219 >seq10 Length=2616268 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/89 (80%), Gaps = 8/89 (9%) Strand=Plus/Minus Query 60051 TTTATGAAAAA--------TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTG 60102 ||||||||||| ||||| || || ||| ||||||||| |||| |||||||| Sbjct 2158614 TTTATGAAAAAAAGGGGACTTTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTG 2158555 Query 60103 ACAGGCGGACATACTCACCACTATACTAC 60131 |||||||| ||||||||||||||||||| Sbjct 2158554 ACAGGCGGGAATACTCACCACTATACTAC 2158526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571243516572760