Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1029 86.0 5e-12 seq680 82.4 6e-11 seq40 82.4 6e-11 >seq1029 Length=71094 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || | |||| || |||||||| ||||||||||||||||| || || Sbjct 12246 TCCACCCCTAAGCCTTAAAACCAGATGCAGTGTTGACTCTTTTTGAATGTTGTAATCAGC 12305 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || ||||||||| || || || ||| | || | |||||||||||| ||| Sbjct 12306 TAGGGTTCGACCATCTTCCAACTGCTTTCCAGCAAAAATCAATCTTTGTTGATCTGGGGG 12365 Query 18218 CACGCCTTCCTTATC 18232 | || ||||| || Sbjct 12366 TATACCCTCCTTGTC 12380 >seq680 Length=135211 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| ||||| | |||| || || ||||| ||||||||||||||||| || || Sbjct 22624 TCCACCCCTAAGTCTTAAAACCAGATGCAGCGTTGACTCTTTTTGAATGTTGTAATCAGC 22565 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| || ||| ||||| || || || || | || | |||||||||||| ||| Sbjct 22564 CAAGGTTCGACCATCCTCCAACTGCTTTCCAGCGAAAATCAATCTTTGTTGATCTGGGGG 22505 Query 18218 CACGCCTTCCTTATC 18232 | || ||||| || Sbjct 22504 TATACCCTCCTTGTC 22490 >seq40 Length=1536145 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || | |||| |||||| || || ||||||||||| ||||| || || Sbjct 682257 TCCACCCCTAAGCCTCAAAACCAGGTGAAGAGTCGACTCTTTTTGAATATTGTAATCAGC 682198 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || ||||||||| ||||| || ||| | || || ||||| ||||| ||| Sbjct 682197 TAGAGTTCGACCATCTTCCAACTGTTTCCCAGCAAAAATCAGCCTTTGCTGATCTGGGGG 682138 Query 18218 CACGCCTTCCTTATC 18232 | || ||||| || Sbjct 682137 TATCCCCTCCTTGTC 682123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378972674028165