Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq33 93.3 5e-14 seq652 82.4 1e-10 >seq33 Length=1606457 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 || || ||||| | || | ||| || | |||| |||| ||||||||||||| ||| || Sbjct 1148410 CCCCCTTGATCAACATAACGAGCAGTATCATTAAAAACCCTCAACATTGGAACAATGCCA 1148469 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542 || ||| | ||||| || || |||||| | ||| | ||||||||||| | ||| Sbjct 1148470 TTAGATGTCCCATTTGTCCCACGGATATAACTACCAGTTGCACGAATATTGTGAGCAGAT 1148529 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 | || ||||| || || ||| || | || ||| ||||| || ||||| || Sbjct 1148530 ATGCCAATTCCTCCAGCAGATTTGCTTATAACAGCACATTCCTTTAAAGTATCATATATT 1148589 Query 63603 CCTTCTATGCTATCATCGATCATG 63626 || || ||||||||||| ||||| Sbjct 1148590 CCCTCAATGCTATCATCTTTCATG 1148613 >seq652 Length=146776 Score = 82.4 bits (90), Expect = 1e-10 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||| || ||||||||||| || |||||||| || || ||||| || ||| | | || Sbjct 110168 AGTGCCTGCATTAAATAACGTTGGAGAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 110109 Query 63722 GTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 63780 || || | | | || || ||||| | ||| || ||||| || || || | ||| | Sbjct 110108 ATATGTTCTGAGAACAGAATCAATATCATCCTTG-TGGATTCCAACAGCTACTCTCATCA 110050 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 ||||||||| || ||||| || | ||| | ||||| | ||| ||| | || | Sbjct 110049 GCATGTGCTGTGGCCTTTCTACTACTTTTCCAGAAACTTTCAGGAGGTAAGATCTCTCAA 109990 Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||| ||||| |||||||||| || |||||| | || ||||| || Sbjct 109989 GAGTCTTAAAGCCAAAATAGTCATAATCAAAGTCCCTGTCATAAATTAT 109941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629185286747760