Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq121 104 2e-17 seq27 100 3e-16 seq129 93.3 4e-14 seq464 91.5 1e-13 seq40 84.2 2e-11 seq13 82.4 8e-11 >seq121 Length=770561 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||||| || || || || |||||||| ||||| || |||| | Sbjct 402999 CGCAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTGCA 403058 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||||||||| || |||||| |||| ||||| |||||||| || || ||||| || Sbjct 403059 TCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGATCCACAGAGATTCCTTCCTTA 403118 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | |||| || | | || | ||||||| | ||||||||| | || | Sbjct 403119 TC-CTGAATCTTTGCCTTGACATTATCGATGGTGTCGGAGCTCTCCACCTCCAAAGTGAT 403177 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| || ||||| || ||||| || || ||||| Sbjct 403178 CGTCTTCCCCGTCAAAGTCTTTACAAAGATCTGCAT 403213 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| | | || | ||| | ||| | ||| ||||| ||||| ||||| || || Sbjct 403442 GCCGCCCCTGAGGCGGAGAACCAGGTGCAGCGTGGACTCCTTTTGGATGTTGTAGTCTGC 403501 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || || ||||| || |||||| ||||||| || |||||||| || || Sbjct 403502 CAGGGTGCGGCCATCGTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGG 403561 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCA 139715 || || ||||| || ||| | || | ||| | | || || |||| | | ||| | Sbjct 403562 GATCCCCTCTTTATCC-TGAATCTTAGCTTTCACGTTATCAATGGTGTCTGAGCTCTCAA 403620 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | ||||||||||| | || || || || || ||||| Sbjct 403621 CCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 403669 >seq27 Length=1763170 Score = 100 bits (110), Expect = 3e-16 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| |||||||| || || ||| |||||||||| ||||| || || || ||||| || || Sbjct 581052 GTCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTT 580993 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 ||| ||| | |||| ||| | | || | || |||| || ||||||||||| ||| | Sbjct 580992 GTCT-TGAATCTTTGCCTTAACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGA 580934 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | || || ||||| || ||||| Sbjct 580933 TGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 580897 >seq129 Length=753513 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| |||||||| |||||||||||||| || || |||| | || || Sbjct 556246 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTATAGTCCGCCAGCGTGCGCCCATCCTCC 556305 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||||||||||||| |||| || | |||||||| || || ||||| || ||||| || Sbjct 556306 AGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTC-CTG 556364 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | || | | || | ||||||| | ||| || || | || | ||||| Sbjct 556365 AATCTTAGCCTTCACATTATCAATCGTGTCGGAGCTCTCAACTTCCAGAGTGATGGTCTT 556424 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | || || || || || ||||| Sbjct 556425 GCCAGTGAGGGTCTTCACAAAGATCTGCAT 556454 >seq464 Length=225985 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||| | || ||||| ||||| |||||||||||| | |||| ||| || Sbjct 137839 AACCAGGTGGAGAGTGGACTCCTTTTGGATGTTATAATCGGCGAGGGTGCGGCCGTCCTC 137898 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||| || || || || ||||||| || ||||| || || || |||||||| || || Sbjct 137899 GAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG-GGGATGCCTTCCTTATCCTG 137957 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | ||||| | | ||| ||||| | ||| | |||||| Sbjct 137958 GATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGCTCTCGACCTCCAAGGTGATCGTCTT 138017 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | || || ||||| |||||||| Sbjct 138018 GCCGGTGAGGGTCTTGACGAAGATTTGCAT 138047 >seq40 Length=1536145 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 6/123 (5%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGA-- 139608 |||||| | ||||| || |||||||||||||| || ||||| || | | | |||| Sbjct 682242 CAAAACCAGGTGAAGAGTCGACTCTTTTTGAATATTGTAATCAGC---TAGAGTTCGACC 682186 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| | |||||| |||||| | ||||| | ||||||||| || ||||| || || || Sbjct 682185 ATCTTCCAACTGTTTCCCAGCAAAAATCAGCCTTTGCTGATCTGGGGGTATCCCCTCCTT 682126 Query 139669 GTC 139671 ||| Sbjct 682125 GTC 682123 >seq13 Length=2550137 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || || ||||| || ||| | |||| ||||||||||||| Sbjct 1356617 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGT 1356676 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||| || || ||||| || || || ||||| || ||||| ||| || Sbjct 1356677 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 1356736 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||| | || ||| ||||| | ||| | |||||||| || Sbjct 1356737 GCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTG 1356796 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || || ||||| || ||||| Sbjct 1356797 AGGGTCTTCACGAAGATCTGCAT 1356819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495565970346400