Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq121 87.8 2e-12 seq129 84.2 2e-11 seq27 82.4 8e-11 >seq121 Length=770561 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || ||||| || || ||||||||||| || |||| | |||||||| || Sbjct 403011 TGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTGCATCTTCGAGCTGC 403070 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || |||||| |||| ||||| |||||||| || || ||||| || || ||| ||| Sbjct 403071 TTTCCAGCAAAGATAAGACGCTGCTGATCCACAGAGATTCCTTCCTTATCCTGAATCTTT 403130 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | ||||| | | || || || | ||| | |||||| || ||| Sbjct 403131 GCCTTGACATTATCGATGGTGTCGGAGCTCTCCACCTCCAAAGTGATCGTCTTCCCCGTC 403190 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 || || ||||| || || ||||| Sbjct 403191 AAAGTCTTTACAAAGATCTGCAT 403213 >seq129 Length=753513 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||||| ||||| || ||||| ||||| || || || |||| | || || Sbjct 556246 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTATAGTCCGCCAGCGTGCGCCCATCCTCC 556305 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || |||||||||||| |||| || | |||||||| || || ||||| || ||||| | Sbjct 556306 AGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGA 556365 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || || | | || | |||||| | | || ||||| | ||| | |||||| Sbjct 556366 ATCTTAGCCTTCACATTATCAATCGTGTCGGAGCTCTCAACTTCCAGAGTGATGGTCTTG 556425 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || || || || || ||||| Sbjct 556426 CCAGTGAGGGTCTTCACAAAGATCTGCAT 556454 >seq27 Length=1763170 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 ||||| || || | || | || | ||||| || ||||| || || ||||||||||| Sbjct 581581 TGGCCACCACGGAGGCGGAGCACCAGATGAAGAGTGGATTCCTTCTGAATGTTGTAATCC 581522 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || |||| || || || || ||||||||| |||||| ||| ||||| || ||| Sbjct 581521 GCCAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGA 581462 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || || || ||||| |||||| || | | || | ||| |||| | || Sbjct 581461 GGAATACCCTCCTTGTCCTGAATTTTGGCCTTCACATTGTCAATCGTATCCGAGCTCTCG 581402 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || |||| || | ||||| || || | ||||| || || || ||||| Sbjct 581401 ACCTCAAGGGTGATGGTCTTCCCAGTGAGGGTTTTGACAAAGATCTGCAT 581352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506505376555440