Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq129 93.3 3e-14 seq363 84.2 2e-11 >seq129 Length=753513 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||||||||| || || ||||||| || | ||||||||||||||||| Sbjct 556258 GTAGACTCCTTTTGAATGTTATAGTCCGCCAGCGTGCGCCCATCCTCCAGCTGTTTACCA 556317 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 ||| | || || |||||||||||| ||| | |||||| ||||| Sbjct 556318 GCAAAGATGAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTC 556361 >seq363 Length=303632 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || | | ||| || |||| ||| | || ||||| || |||||||||||||| | Sbjct 177751 TTCCACCCCTAAGCCTCAAAACCAGGTGAAGAGTCGACTCTTTCTGAATATTGTAATCAG 177810 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| | || |||| |||||| || ||| |||| | ||||||||||||| || Sbjct 177811 CTAGGGTTCGACCATCTTCCAACTGTTTCCCAGCAAAAATTAACCTCTGCTGATCCAAGG 177870 Query 18933 GCACGCCCTCTTTGTC 18948 | | ||||| ||||| Sbjct 177871 GTATCCCCTCCTTGTC 177886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414166989843898