Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq27 102 7e-17 seq88 96.9 3e-15 seq121 86.0 5e-12 seq474 84.2 2e-11 >seq27 Length=1763170 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| ||| ||||| |||||||||||||| |||| || | ||||| Sbjct 581561 CACCAGATGAAGAGTGGATTCCTTCTGAATGTTGTAATCCGCCAGGGTGCGGCCATCCTC 581502 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||||||| | | || ||||||||||| || || | || ||||||||| Sbjct 581501 CAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTG 581442 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| ||| | | | || ||||| | ||| ||| | || ||||| || Sbjct 581441 AATTTTGGCCTTCACATTGTCAATCGTATCCGAGCTCTCGACCTCAAGGGTGATGGTCTT 581382 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| ||||| ||||| ||||||||| Sbjct 581381 CCCAGTGAGGGTTTTGACAAAGATCTGCATC 581351 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||| ||||| || || ||||| || || || || || ||||||| |||| Sbjct 581100 ATGGAGGGTGGATTCCTTCTGGATATTGTAGTCGGC-AAGGGTGCGGCCGTCCTCGAGCT 581042 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| ||| | | || | ||||||||| || || | | |||||||| ||| | Sbjct 581041 GCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCT 580982 Query 48642 TCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 | ||| | | | | | |||||||||| |||||| ||| | || ||||| || ||| Sbjct 580981 T-TGCCTTAACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCG 580923 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||||| || || || ||||||||| Sbjct 580922 GTGAGAGTCTTGACGAAGATCTGCATC 580896 >seq88 Length=981168 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | || ||||||| |||||| Sbjct 85026 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 85085 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||||||| ||| | | ||||||||| || || Sbjct 85086 TTTCCGGCGAAGATGAGGCGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTG 85145 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || || || || | |||||| ||||| || ||||| || |||| Sbjct 85146 GCCTTGACGTTGTCG--ATCGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGG 85203 Query 48702 TGAGAGTTTTCACAAAAATCTGCATCGTG 48730 |||| || || ||||| ||||||||| || Sbjct 85204 TGAGGGTCTTGACAAAGATCTGCATCTTG 85232 >seq121 Length=770561 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||||| |||||||||||||| |||| || | || || |||||| Sbjct 403011 TGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTGCATCTTCGAGCTGC 403070 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || | ||||||||||||||| | | | |||||| ||| ||| || Sbjct 403071 TTTCCAGCAAAGATAAGACGCTGCTGATCCACAGAGATTCCTTCCTTATCCTGAATCTTT 403130 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| |||| |||| ||| | || || || || || || Sbjct 403131 GCCTTGACATTATCGATGGTGTCGGAGCTCTCCACCTCCAAAGTGATCGTCTTCCCCGTC 403190 Query 48704 AGAGTTTTCACAAAAATCTGCAT--CGTGTCTTGATCGAAG 48742 | ||| || ||||| |||||||| || |||| |||| || Sbjct 403191 AAAGTCTTTACAAAGATCTGCATGCCGCCTCTTAATCGGAG 403231 >seq474 Length=218880 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| || | || ||||||| |||||||| ||| || | Sbjct 25110 CTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 25169 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| || ||| | | ||||||||| || || ||||| | Sbjct 25170 GATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 25229 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| |||| |||||| ||||| || || || || || || || || ||| Sbjct 25230 GTCG--ATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTCTTCCCCGTCAGGGTCTTC 25287 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 25288 ACGAAGATCTGCAT 25301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420838852602317