Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq16878 120 2e-22 seq436 111 8e-20 seq116 109 3e-19 seq758 107 1e-18 seq569 107 1e-18 seq480 107 1e-18 seq146 107 1e-18 seq2 107 1e-18 seq358 105 3e-18 seq19 104 1e-17 seq12 104 1e-17 seq1336 100 1e-16 seq199 100 1e-16 seq47 100 1e-16 seq25 96.9 2e-15 seq329 95.1 6e-15 seq14 84.2 1e-11 >seq16878 Length=1650 Score = 120 bits (132), Expect = 2e-22 Identities = 94/111 (85%), Gaps = 3/111 (3%) Strand=Plus/Minus Query 11422 TCCAGGGAAATATAGAATTAATAAAAAA-TCAAAT--TGGCCCATGAAAGGATCGAACCT 11478 |||||| ||| || |||||| ||||| | |||| ||||||||| | | |||||||| Sbjct 481 TCCAGGAAAAAATTATATTAATCAAAAACTTAAATCCTGGCCCATGCAGGTCTCGAACCT 422 Query 11479 TCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 421 GCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 371 >seq436 Length=244619 Score = 111 bits (122), Expect = 8e-20 Identities = 78/89 (88%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11444 AAAAAATCA--AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | || ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 23404 AAAAAATTATGAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 23345 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| ||||||||||||||| ||||| Sbjct 23344 ACGCTCTAACCAACTGAGCTAATAGGCCG 23316 >seq116 Length=783510 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 444276 AAAAAATAAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 444219 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 444218 GCTCTAACCAACTGAGCTAATAGGCC 444193 >seq758 Length=112640 Score = 107 bits (118), Expect = 1e-18 Identities = 88/107 (82%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 11426 GGGAAATATAGAATTAATAAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGA 11482 || ||| |||| ||| |||||| || |||||||||| | | |||||||| ||| Sbjct 109748 GGCAAAAATAGGATTTGCCAAAAATAGAAATTTTGGCCCATGCAGGTCTCGAACCTGCGA 109807 Query 11483 CCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 109808 CCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 109854 >seq569 Length=182082 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 52378 AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 52319 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 52318 CAACTGAGCTAATAGGCC 52301 >seq480 Length=215843 Score = 107 bits (118), Expect = 1e-18 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||||| || | |||||| || ||||||||| | | |||||||| ||||||||| Sbjct 14524 AAATATAAAAGTCTGAAAAAAAGTAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 14583 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| ||||||||||||||| |||| Sbjct 14584 CGTTGTTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 14624 >seq146 Length=692549 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 466374 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 466433 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 466434 CAGCTGAGCTAATAGGCC 466451 >seq2 Length=3709472 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1125873 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1125814 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 1125813 CAACTGAGCTAATAGGCC 1125796 >seq358 Length=308300 Score = 105 bits (116), Expect = 3e-18 Identities = 78/91 (86%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||||||||| | ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 199222 TTAATAAAAATTTG---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 199278 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||||||||||| |||| Sbjct 199279 ACGACGCTCTAACCAACTGAGCTAATAGGCC 199309 >seq19 Length=2013266 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 963960 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 963901 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 963900 TGAGCTAATAGGCC 963887 >seq12 Length=2552775 Score = 104 bits (114), Expect = 1e-17 Identities = 81/95 (85%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 11438 ATTAATAAAAAA-TCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||||| ||||| | |||| ||||||||| | | |||||||| |||| |||| ||||| Sbjct 74610 ATTAATCAAAAACTTAAATCCTGGCCCATGCAGGTCTCGAACCTGCGACTTTCGGGTTAT 74669 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| ||||||||||||||| |||| Sbjct 74670 TAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 74704 >seq1336 Length=50263 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 5906 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 5965 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 5966 TGAGCTAATAGGCC 5979 >seq199 Length=515414 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 234561 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 234502 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 234501 TGAGCTAATAGGCC 234488 >seq47 Length=1423074 Score = 100 bits (110), Expect = 1e-16 Identities = 71/81 (88%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 11452 AAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTR 11509 ||||| |||||||| | | |||||||| ||||||||||||||||||||| ||||||| Sbjct 758636 AAATTTAGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACCACGCTCTA 758695 Query 11510 ACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||| ||||| Sbjct 758696 ACCAACTGAGCTAATAGGCCG 758716 >seq25 Length=1857059 Score = 96.9 bits (106), Expect = 2e-15 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 1056523 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1056582 Query 11516 TGAGCTAATGGGCCGTCGAC 11535 ||||||||| |||| |||| Sbjct 1056583 TGAGCTAATAGGCCAACGAC 1056602 >seq329 Length=328707 Score = 95.1 bits (104), Expect = 6e-15 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 141580 AAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 141639 Query 11513 AACTGAGCTAA 11523 |||||||| || Sbjct 141640 AACTGAGCAAA 141650 >seq14 Length=2539063 Score = 84.2 bits (92), Expect = 1e-11 Identities = 71/86 (83%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTT---CGACCTTCGCGTTATTAGCACGAC 11503 ||||||| |||||||||| || |||||||| ||||||| || ||||||||||| | Sbjct 1940984 AAATCAA-TTGGCCCATGCAAATCTCGAACCTCTTGCGACCTTTGCATTATTAGCACGGC 1940926 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||| ||||||| |||| Sbjct 1940925 GCTCTAACCAACTAAGCTAATAGGCC 1940900 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261235235825092