Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq129 98.7 9e-16 seq680 87.8 2e-12 seq1029 86.0 6e-12 seq40 86.0 6e-12 seq27 82.4 7e-11 >seq129 Length=753513 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 ||||| | ||||| || || | ||||| || | ||||| | ||| | || | | | Sbjct 556226 ATGCAGATATTTGTGAAGACCCTCACTGGGAAGACCATCACTCTGGAAGTGGAGAGCTCA 556167 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||| | ||||| ||||| |||||||||||||| ||||| ||||| Sbjct 556166 -GACACCATCGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGGATCCCTCCTGATCA 556108 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || ||||||| | || || || || || |||| | | | | |||||||| Sbjct 556107 GCAGAGGCTCATTTTTGCTGGGAAGCAGCTTGAGGATGGGCGTACCCTGGCAGACTATAA 556048 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || || ||||| ||| ||||||| |||||| | ||| | || || Sbjct 556047 CATCCAGAAGGAATCCACTCTCCATCTTGTCCTGCGTCTTCGTGGTGG 556000 >seq680 Length=135211 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| || || ||||| || |||||||||||| | |||| || || || || | || Sbjct 22490 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTCGCTGGAAAGCAGTTGGAG 22549 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| | ||| | | || || |||||||||||||| || || | |||||||| | Sbjct 22550 GATGGTCGAACCTTGGCTGATTACAACATTCAAAAAGAGTCAACGCTGCATCTGGTTTTA 22609 Query 26982 AGACTTAGAGGAGGAAAAATATGATTA 27008 |||||||| || |||| | ||||||| Sbjct 22610 AGACTTAGGGGTGGAACA--ATGATTA 22634 >seq1029 Length=71094 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| || || ||||| || |||||||||||| | |||| | || || || | ||| Sbjct 12380 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTTGCTGGAAAGCAGTTGGAA 12321 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | ||| | | ||| || || |||||||||||||| || || | |||||||| | Sbjct 12320 GATGGTCGAACCCT-AGCTGATTACAACATTCAAAAAGAGTCAACACTGCATCTGGTTTT 12262 Query 26981 GAGACTTAGAGGAGGAAAAAT 27001 || ||||| || |||| ||| Sbjct 12261 AAGGCTTAGGGGTGGAACAAT 12241 >seq40 Length=1536145 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| || |||||||| || ||||| ||||| || |||| | || ||||| | ||| Sbjct 682123 GACAAGGAGGGGATACCCCCAGATCAGCAAAGGCTGATTTTTGCTGGGAAACAGTTGGAA 682182 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | ||| | ||| || || || ||||||||||| || ||| | || ||||| | Sbjct 682183 GATGGTCGAACTCT-AGCTGATTACAATATTCAAAAAGAGTCGACTCTTCACCTGGTTTT 682241 Query 26981 GAGACTTAGAGGAGGAAAAATATGATTA 27008 ||| ||||| || |||| | ||||||| Sbjct 682242 GAGGCTTAGGGGTGGAACA--ATGATTA 682267 >seq27 Length=1763170 Score = 82.4 bits (90), Expect = 7e-11 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| ||||| || || || || || || || || || Sbjct 581183 CGACACCATCGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCA 581242 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 || || || || | || |||||| |||||||| |||| | || | ||| ||||| | Sbjct 581243 GCAGAGGCTGATCTTCGCCGGCAAGCAACTCGAGGATGGCCG-CACCTTAGCGGACTACA 581301 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| ||||| |||||||| ||||||| ||||| Sbjct 581302 ACATCCAAAAGGAATCTACGCTCCATCTCGTCCT 581335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478181840900240