Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq27 93.3 4e-14 seq464 91.5 1e-13 seq474 84.2 2e-11 seq1029 82.4 7e-11 seq121 82.4 7e-11 >seq27 Length=1763170 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | |||||| | || |||||| | | Sbjct 581124 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATTACCCTGGAGGTCGAGAGCTCC 581183 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| || || || || || || || || || Sbjct 581184 GACACCATCGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAG 581243 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| ||||| | || ||||||||||||||| |||| | | || | ||| || || || Sbjct 581244 CAGAGGCTGATCTTCGCCGGCAAGCAACTCGAGGATGGCCG-CACCTTAGCGGACTACAA 581302 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| ||||| |||||||| Sbjct 581303 CATCCAAAAGGAATCTAC 581320 >seq464 Length=225985 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || || |||| ||| | || |||||| | Sbjct 138047 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCTTGGAGGTCGAGAGCTCG 137988 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| || || |||||||| || || || || Sbjct 137987 GACACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCC-CCGGACCAG 137929 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||||||||||||||| || | | | | | || |||||||||| Sbjct 137928 CAGCGCCTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACCCTCGCCGATTATAAC 137869 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| || || || Sbjct 137868 ATCCAAAAGGAGTCCAC 137852 >seq474 Length=218880 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || || || | || || || | || ||| |||| || ||| | Sbjct 25305 CAACATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACTATCACCCTCGAGGTGGAGTC 25246 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||||||||| | ||||| ||||| ||||| || ||||| || || || Sbjct 25245 CTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGA 25186 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | || || | || ||| ||||| ||||| || | | | | | || |||||| Sbjct 25185 CCAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGATTA 25126 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || ||||| Sbjct 25125 CAACATCCAGAAGGAGTCTAC 25105 >seq1029 Length=71094 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/146 (74%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| || || ||||| || |||||||| ||| |||||| | || ||||| | ||| Sbjct 12380 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTTGCTGGAAAGCAGTTGGAA 12321 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| ||| | | ||| ||||| |||||||||||||| || ||| | ||| | || || Sbjct 12320 GATGGTCGAACCCT-AGCTGATTACAACATTCAAAAAGAGTCAACACTGCATCTGGTTTT 12262 Query 24203 AAGATTGAGAGGAGGACTATAATGAT 24228 ||| | || || ||| | |||||| Sbjct 12261 AAGGCTTAGGGGTGGA--ACAATGAT 12238 >seq121 Length=770561 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| || || || || || |||| || | || || ||| | | Sbjct 403213 ATGCAGATCTTTGTAAAGACTTTGACGGGGAAGACGATCACTTTGGAGGTGGAGAGCTCC 403154 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||||| || || ||||| || || ||||| Sbjct 403153 GACACCATCGATAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCTCTGTGGATCAG 403094 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||| | || || | | || ||||| |||||||||| || ||| || ||||| || Sbjct 403093 CAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGATG-CACGCACGCTGGCAGATTACAA 403035 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 |||||| || ||||| || |||| Sbjct 403034 CATTCAGAAGGAATCCACCCTTCA 403011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429515151369135