Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_007458.1 Length=37253 Score E Sequences producing significant alignments: (Bits) Value seq7757 708 0.0 seq31478 235 1e-57 seq13815 203 8e-48 seq49971 172 1e-38 >seq7757 Length=3350 Score = 708 bits (784), Expect = 0.0 Identities = 1183/1705 (69%), Gaps = 15/1705 (1%) Strand=Plus/Plus Query 13083 ATTGATGATTTAAAAATTTGGAAGGTAAACAAAGTTCCATCTAATGCACAACCATATATC 13142 ||||||||||| ||||||||||| || || | | || || | || ||||| Sbjct 135 ATTGATGATTTGAAAATTTGGAAAGTCAATATGAATACACAAGATAATCCTCCTTATATT 194 Query 13143 TTTGATACTGGAGATAAAATTGTTATCGATACTGAGAAAAGTCTTGTCACGATCAATGGG 13202 |||||| ||||||||| | ||||||||||||||| ||||||||| | |||||||| Sbjct 195 TTTGATGTTGGAGATAAGGTGGTTATCGATACTGAGCGAAGTCTTGTATCAATCAATGGT 254 Query 13203 GAGAAAGCAATCAATATAAAAGAAATCTTTAGTAATTTTCCTATCGTAATACGTGGTGAA 13262 | ||||| || ||| ||||||| || || ||| ||| ||| | || | || | Sbjct 255 AAAAAAGCTATTAATTTAAAAGATATATTCAGTGATTATCCAGTTGTTAGCGAAGGCTCA 314 Query 13263 AATCGTATCGATATAATGCCACCTGATGTA---AATGCAACAATCAGTTATAGGGAGAGA 13319 || | || || ||||| | ||||| | || | | | | |||||||||| || Sbjct 315 AACAAACTTGAAATTATGCCTTCCGATGTGGGGACAGCTAAAGTGATTTATAGGGAGCGA 374 Query 13320 TATAGATGAGAACACCAAGCGGGATTTTGCATGTTGTGGATTTTAAAACGGATCAAATCG 13379 | | ||||||||||| || || || | ||| || | |||||| |||| |||||||| | Sbjct 375 TTCAAATGAGAACACCTAGTGGTATCCTTCATATTATTGATTTTCAAACAGATCAAATTG 434 Query 13380 TCGCAGCTATCCAGCCAGAGGACTATTGGGATGACAAACGGCATTGGGAACTAAAAAATA 13439 | || |||| || || | || |||||| ||| | || ||||||||| ||||| ||| Sbjct 435 TGGCCACTATACAACCGAAAGATTATTGGAGTGATATTCGTCATTGGGAAATAAAAGATA 494 Query 13440 ACATTGACATGTTGGATTTCACCGCTTTTGATGGAACAGACCATGCAGTTACGTTACAAC 13499 | |||| | || || || | | |||||| || || ||||||| | | | | Sbjct 495 ATGTTGATACATTAGAGTTTAAAGTGTTTGATAATACGGAACATGCAGCTGCACTCATGC 554 Query 13500 AACAGAATCTTGTTTTAAAAGAAGTTCGCGATGGAAGAATCGTACCGTATGTTAT---TA 13556 | || ||| | || ||||||||||| || |||||| | || || || || ||||| || Sbjct 555 AGCAAAATTTAGTATTAAAAGAAGTGCGTGATGGACGGATTGTTCCTTACGTTATAAATA 614 Query 13557 CAGAGACTGaaaaaaaTTCC-GATAAACGATCCATTACCACATACGCTTCAGGAGCTTGG 13615 || ||||||| |||| || | | |||| |||| | ||||| || |||||| Sbjct 615 ATGAAGCTGAAAAGGATTCAAGAGATA-GATCACTTACTGTACGTGCTTCCGGTGCTTGG 673 Query 13616 ATTCAAATTGCTAAATCAGGGGTCATAAAACCACAACGGATAGAGAGTAAGACGGTCAAC 13675 |||||||||| ||| || || |||||||| ||||| |||| || || || Sbjct 674 GTTCAAATTGCAAAAGACGGTTATATCCTGCCACAACGTATAGAAGGTAAAACAGTAAAT 733 Query 13676 GAATTTATGGATTTAGCACTCTTAGGTATGAAGTGGCAGCGTGGAGTTACTGAATATGCT 13735 | ||||||||| | || || |||||| ||||||| | ||||| || || |||||| Sbjct 734 CAGTTTATGGATATGGCTCTTGTAGGTACGAAGTGGAAACGTGGCAGAACAGAGTATGCT 793 Query 13736 GGATTTCATACAATGACCATCGATGAATATATGGACTCACTCACTTTTTTAAAGAAGATT 13795 || || |||||||||||||||||| ||| || | || || ||||||||||| || Sbjct 794 GGTTTCCATACAATGACCATCGATACCATTATAGATCCTCTTACCTTTTTAAAGAAAATA 853 Query 13796 GCATCTTTATTTAAACTGGAAATTCGATATCGTGTTGAGATTAAAGGTTCAAAAATCATC 13855 || |||||||| | | || |||| ||| ||||| || | |||||| | || | Sbjct 854 GCTTCTTTATTCGATTTAGAGATTCAATACCGTGTAGAAGTAGTCGGTTCACAGATTGTT 913 Query 13856 GGTTGGTATGTAGATATGATTCAAAAACGCGGGCATGATACAGGCAAAGAAATAGAATTA 13915 || ||||| || |||||| | |||||||||| || | |||||| ||| || ||| Sbjct 914 GGCTGGTACGTGGATATGGTGAAAAAACGCGGTAGAGACATAGGCAAGGAAGTAACTTTA 973 Query 13916 GGAAAAGATTTAGTCGGTGTTACGCGTATTGAACATACACGTAATATTTGCACTGCTTTA 13975 || || |||||||| ||||||| |||||||| ||| | | || |||| ||||| ||| Sbjct 974 GGGAAGGATTTAGTTGGTGTTAAACGTATTGAGCATTCTAGGGATGTTTGTACTGCCTTA 1033 Query 13976 GTTGGATTTGTAAAAGGTGAAGGTGACAAGGTAATCACTATTGAAAGTATTAATAAAGGT 14035 || ||||| || | || ||||| | | | || || ||||||| |||||| | ||| Sbjct 1034 GTCGGATTCGTCCAGGGCGAAGGGGGTACCATTATTACAGTTGAAAGCATTAATGATGGT 1093 Query 14036 CTACCCTATATCGTAGATGCAGATGCATTTCAAAGATGGAATGAACACGGACAACATAAA 14095 |||| ||||| ||| ||||| | |||| | ||||| || | || |||||||| Sbjct 1094 TTACCTTATATTACTGATAGCGATGCCTATCAACGCTGGAACGAGAATGGTAAACATAAA 1153 Query 14096 TTCGGTTTTTATACACCAGAAACAGAAGAATTAGACATGACTCCAAAACGTTTACTGACG 14155 || || || || || ||||||||||||||| | | ||||| ||||| || | |||| Sbjct 1154 TTTGGCTTCTACACTCCAGAAACAGAAGAACAAAATATGACACCAAAGCGGCTCATGACT 1213 Query 14156 CTTATGGAAATAGAATTGAAAAAGCGTGTCAATTCCTCAATCTCTTATGAAGTGGAAGCA 14215 |||||| ||| ||| || || || || ||| | || | ||| || || |||||| Sbjct 1214 CTTATGAAAACAGAGTTCGCTAAACGCGTTAATACTTCTGTTGTTTACGATGTAGAAGCA 1273 Query 14216 CAATCAATTGGTCGTATTTTCGGCCTAGAACACGAATTAATTAACGAAGGCGACACGATC 14275 | | || || ||| | || || ||| || || ||||||| ||||| || || || Sbjct 1274 GCAGCTATAGGGCGTGTATTTGGACTATCTCATGAGCTAATTAATGAAGGAGATACAATT 1333 Query 14276 AAAATTAAAGATACAGGGTTTACACCAGAATTATATCTTGAAGCGCGAGTAATAGCTGGA 14335 |||||||||||| || |||||||| || | ||| | ||||| || | ||| |||||| Sbjct 1334 CGAATTAAAGATACTGGATTTACACCGAAACTTTATTTAGAAGCACGGGCAATCGCTGGA 1393 Query 14336 GATGAATCTTTTACAGACCCAACGCAAGATAAATATGAATTCGGAGATTATCGTGAGATT 14395 ||||| || ||||||||||| | ||||||||||||| || || || |||||||| ||| Sbjct 1394 GATGAGTCATTTACAGACCCTTCACAAGATAAATATGTGTTTGGCGACTATCGTGAAATT 1453 Query 14396 GTTAATCAAAATGAGGAATTAAGAAAAATTTACAATCGTATTCTTAGTTCGCTTGGCAAT 14455 | ||| ||||| ||| | | ||| | || ||| | | ||| ||| | || ||| Sbjct 1454 ACTGATCCGAATGAAGAAATGCGGAAATTGTATAATAGAGTACTTGCTTCTTTAGGTAAT 1513 Query 14456 AAAC------AAGAAATGATAGACCAGCTAGATAAACTAGTGAACGAAGCTAACGAAACC 14509 ||| ||||| | |||| || ||||| || ||| | ||||| || | || Sbjct 1514 AAAGCCAATAAAGAACTATTAGAACAACTAGAAAAGTTAGCAGAAGAAGCGAAAGGGACA 1573 Query 14510 GCTAGTAATGCA-AAGAAGGAGTCAGAAGCAGCAAAAGCACTAGCTGAAAAAGTACAAGA 14568 ||| | || || || || || || |||| || | ||| |||||||| || || || Sbjct 1574 GCTGAACAAGCTCAAAAAAGAATCTCAAACAGCCAAGGAACTTGCTGAAAAGGTCCAGGA 1633 Query 14569 GAATATTAAAAATAATACCGTTGAAATTATAGAATCCAAGAATCCACCGACAACAGGACT 14628 ||| | ||||||||||| || | ||||| ||| | || ||||||||||| || Sbjct 1634 AAATCTAAAAAATAATACGGTAAATATTATTGAAGCTAAAAATCCACCGACCGATAATCT 1693 Query 14629 GAAACCTTTTAAAACGCTTTGGCGTGATATTAGTAACGGAAAGCCCGGTATTTTAAAAAT 14688 | | ||||||| | ||||| |||||||| || || || || |||||||||||| | Sbjct 1694 TATAGTAGGTAAAACGTTATGGCGAGATATTAGCAATGGTAAACCTGGTATTTTAAAAGT 1753 Query 14689 ATGGACAGGTACAGCGTGGGAATCAGTTGTACCCGATGTTGAATCTGTaaaaaaaGAAAC 14748 |||| |||| || ||||| || | || ||||| ||| | | || ||||| || Sbjct 1754 GTGGAACGGTAAAGATTGGGAGCTCCTTATTCCTGATGTGGAAGCAATTAAGAAAGATAC 1813 Query 14749 ATTAGATCAGGTTAATAAAGATATT 14773 || || ||||| | ||||| ||| Sbjct 1814 GTTGGAGCAGGTGACAAAAGAGATT 1838 >seq31478 Length=1036 Score = 235 bits (260), Expect = 1e-57 Identities = 289/395 (73%), Gaps = 0/395 (0%) Strand=Plus/Minus Query 17694 GGTACAAAGTGTCCGTATACAATGAAGCCTAAATATATCACTGTTCACAACACATATAAT 17753 ||||||||||| || ||||||||||| || ||| || || || ||||| || || || Sbjct 1036 GGTACAAAGTGCCCATATACAATGAATCCAGAATTCATTACAGTCCACAATACGTACAAC 977 Query 17754 GATGCTCCAGCTGAAAATGAAGTGAGTTACATGATTAGTAACAATAATGAGGTGTCGTTT 17813 |||||| |||| ||||| ||||| ||| |||||| |||| ||||| | || |||||| Sbjct 976 GATGCTACAGCAGAAAACGAAGTATCTTATATGATTCGTAATGATAATCAAGTCTCGTTT 917 Query 17814 CATATTGCAGTAGATGACAAGAAAGCGATTCAAGGTATTCCGTTGGAACGTAATGCATGG 17873 ||||||||||||||||| || |||| | ||||||||||| || |||||||| || ||| Sbjct 916 CATATTGCAGTAGATGATAAAGAAGCTGTACAAGGTATTCCTTTAGAACGTAACGCTTGG 857 Query 17874 GCTTGCGGAGACGGCAATGGTTCGGGGAATCGTCAATCCATTTCTGTAGAAATCTGTTAT 17933 ||| || ||||| || || |||||| |||| || || ||||| || || Sbjct 856 CATTGTGGTGACGGTGGCGGAAATGGTAATCGTAAATCTATCGGAGTTGAAATTTGCTAC 797 Query 17934 TCAAAATCAGGAGGAGATAGATACTATAAAGCTGAGGATAATGCTGTTGATGTTGTACGA 17993 || | || |||||| |||| |||||||| || |||||||| | | |||||| | Sbjct 796 TCTTTAAGCGGTGGAGATCGATATTATAAAGCAGAAGATAATGCAGCTATCGTTGTAGCA 737 Query 17994 CAACTTATGTCTATGTACAATATTCCGATTGAAAATGTTCGAACTCATCAATCCTGGTCA 18053 ||| | ||| |||||||||||| ||| || ||||| || || ||||| ||| Sbjct 736 CAATTAATGAAACAGTACAATATTCCAATTAGTAAAGTTCGCACACACCAATCATGGAGT 677 Query 18054 GGTAAATATTGTCCGCATAGAATGTTAGCTGAGGG 18088 || || |||||||| ||| | ||| | | ||| || Sbjct 676 GGAAAGTATTGTCCTCATCGTATGCTTGATGAAGG 642 >seq13815 Length=1928 Score = 203 bits (224), Expect = 8e-48 Identities = 243/328 (74%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 9025 TTAGGTGAAGCAGCCGAAATTGCTTCCACAGCTCTGAATGCATTTAAAGCAGACCATCTT 9084 ||||| || || || |||||||||| || ||||| ||||| |||| || || |||| Sbjct 1926 TTAGGAGATGCTGCTCAAATTGCTTCGACTGCTCTTAATGCGTTTAGGGCTGATAATCTA 1867 Query 9085 TCAGTTGCGGATGCAGCCAATATTTTATCTGGTGCAGCCAATGCTTCCGCAACTGATGTA 9144 ||||| | ||||| |||||| | ||| ||||||| || ||||| || |||||| ||||| Sbjct 1866 TCAGTAACCGATGCGGCCAATCTCTTAGCTGGTGCTGCAAATGCATCGGCAACTAATGTA 1807 Query 9145 AGAGAGTTAAAATATGGACTTTCA--GCTTCATCAGCAGTAGCAGCGGGAGCCGGAATGA 9202 | || | |||| ||| | ||| | || || ||||||||| | |||| ||| ||| Sbjct 1806 AAGGAAATGCAATACGGATTATCAATGGTT--TCTGCAGTAGCATCTGGAGTCGGTTTGA 1749 Query 9203 CGTTTAAGGATACAGCTACAACTTTAGCGGTATTTGCACAAAATGGTCTTAAGGGATCAG 9262 |||||||||||| |||| | |||| ||||||| ||||| || ||| ||||| | Sbjct 1748 GTTTTAAGGATACAACTACTGCCCTAGCATTATTTGCCCAAAACGGGCTTCGCGGATCGG 1689 Query 9263 ATGCAGGTACATCTTTAAAAACAATGTTAATGAGGTTAAATCCTTCAACAAAAGAAGCAT 9322 |||||||||||||||||||||||||| || | |||| |||| | | || ||||| | Sbjct 1688 ATGCAGGTACATCTTTAAAAACAATGCTAGCTAACTTAATTCCTAAATCTAAGGAAGCGT 1629 Query 9323 ATAACAAAATGAGAGATTTAGGACTTAT 9350 || | | | || || |||||||| || Sbjct 1628 ATGAATTATTTAGTGAATTAGGACTAAT 1601 >seq49971 Length=731 Score = 172 bits (190), Expect = 1e-38 Identities = 364/533 (68%), Gaps = 15/533 (3%) Strand=Plus/Plus Query 11703 AGAACTGAATTTAACCGTAAACATGACTAATGTTTTA--GATGGAAAAGAGCTTGCAAAC 11760 |||| | ||||| || || ||| | || || ||| | || || |||| ||||||| Sbjct 123 AGAAATTAATTTGACAGTTAACCTTAC--ATCTTTAATGGACGGTCAAGAAGTTGCAAAA 180 Query 11761 GGAAGTTACACCTATACTACAAAACTTCAAAATCGTGAACAAAAAAGAAGAGCGGAATTT 11820 || | | ||||| |||||| | |||| | | || ||| |||| ||||| Sbjct 181 ATAACAGAGCCTTATACAACAAAAATACAAAGAAGAAATAAAGAAATTAGAGATCAATTT 240 Query 11821 TAAGGGTGGTGAGCACGTTGGGGAAACTTA--GTTTTACTTTTAATAATATTAGAAAAGA 11878 ||||| |||| || | |||||| | | ||||||| ||||||||| |||| | Sbjct 241 TAAGGAGGGTGCTCATG--GGGGAATATCAAAGTTTTACATTTAATAATCAAAGAAGAAG 298 Query 11879 TTATATTCAAATGC-TAGTTGGAAGAAAACGTCCTTCATGGGCTCCAGTAAAAAGAAGAT 11937 || ||| ||||| ||| || | ||| | ||| | ||||| || | ||| | | | Sbjct 299 CTACATTTTAATGCCTAGA-GGTCGTAAAAGACCTGCTTGGGCACCTATTAAACGTAATT 357 Query 11938 TAGTA-AGAGTCCCTCATCGCGCAGGGGCTCTTTTACTTAATACAGAAACGGAGGAACGT 11996 | || | | | || | |||| || || | | |||||| |||| ||| Sbjct 358 TCTTATATACGCAAGGATATC-CAGGAGCAAGGCTATTAAGCACAGAAGTAGAGGCGCGT 416 Query 11997 CGTATTGACGTTCCTCTTGTTATTAAAGCGAAAAAAGATATGGCAGATTTACAAAAGTTA 12056 | |||||||| |||||| || ||||||| | ||||||| || |||||||| ||| | Sbjct 417 CAAATTGACGTGCCTCTTATTGTTAAAGC---ACAAGATATTGCTGATTTACAGAAGGTC 473 Query 12057 AAAGAAGATTTAGCGGATTGGTTATATACAGAGCAACCTGCTGAACTTATTTTTGATGAT 12116 |||||||||||||||||||||||| |||||| || ||| | ||||||||||| Sbjct 474 AAAGAAGATTTAGCGGATTGGTTAATTACAGAACAGGAATGTGAGTTGATTTTTGATGAC 533 Query 12117 GAGTTAGACAGGACTTATTTATCATTAATTGATGGTTCTGTCGATTTGGACGAAATAGTC 12176 || ||| | || |||||| | |||| ||||| || | || || ||| |||| Sbjct 534 GAACCAGATCGCACGTATTTAGCCCTAATAGATGGATCGTTTGACGCAGAAGAATTAGTG 593 Query 12177 AATAGAGGTAAAGGTGTTATTACTTTTGTTTGTCCAATGCCGTATAAATTAGG 12229 ||| | || |||||||| |||| ||| ||||| ||||||||||||||||||| Sbjct 594 AATCGTGGAAAAGGTGTAGTTACATTTATTTGTACAATGCCGTATAAATTAGG 646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118974418108110