Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq129 116 3e-21 seq121 109 5e-19 seq27 107 2e-18 seq464 98.7 9e-16 seq40 93.3 4e-14 seq1029 84.2 2e-11 >seq129 Length=753513 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || ||||||| | ||||| ||| || Sbjct 556909 ATGCAGATCTTTGTTAAGACTCTCACAGGCAAGACCATCACCCTTGAAGTTGAGAGCTCG 556850 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| || || || || ||||| |||||||| Sbjct 556849 GACACAATTGATAATGTTAAGGCCAAAATCCAGGATAAGGAGGGCATTCCCCCTGACCAG 556790 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||||||| | || |||| ||||||| | | || |||||| Sbjct 556789 CAGAGGCTCATATTTGCCGGCAAACAACTTGAGGATGGTCGCACTTTAGCTGACTACAAT 556730 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| || || || || | || || |||| || || || Sbjct 556729 ATCCAGAAAGAGTCAACTCTTCACCTTGTCCTGCGGCTCAGGGGTGG 556683 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| | || || || ||||||| | ||||||||| || Sbjct 556226 ATGCAGATATTTGTGAAGACCCTCACTGGGAAGACCATCACTCTGGAAGTGGAGAGCTCA 556167 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| |||||||||||||| || ||||| || Sbjct 556166 GACACCATCGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGGATCCCTCCTGATCAG 556107 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | |||||||| || || || | || |||| || || ||| || || || Sbjct 556106 CAGAGGCTCATTTTTGCTGGGAAGCAGCTTGAGGATGGGCGTACCCTGGCAGACTATAAC 556047 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || ||| | || || Sbjct 556046 ATCCAGAAGGAATCCACTCTCCATCTTGTCCT 556015 >seq121 Length=770561 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || |||| || | || |||||| ||| Sbjct 402985 ATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATTACTTTGGAGGTGGAGAGTTCT 402926 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| ||||| |||| | ||| ||||| || || || | || || || Sbjct 402925 GACACTATCGATAATGTGAAGGCAAAGATTCAG-GACAAGGAGGGCATATCCCCGGATCA 402867 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | |||||||| || || || | || |||| | ||||| | | |||||||| Sbjct 402866 GCAGCGCCTCATTTTTGCTGGGAAGCAGCTGGAGGATGGTTGCACTCTTGCAGATTACAA 402807 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||| ||||||||||| || || Sbjct 402806 CATTCAGAAAGAATCCACCCTTCA 402783 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||||||||| || || | ||||| | || |||||| || Sbjct 403213 ATGCAGATCTTTGTAAAGACTTTGACGGGGAAGACGATCACTTTGGAGGTGGAGAGCTCC 403154 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| | ||||| | ||| || || ||||| || | || Sbjct 403153 GACACCATCGATAATGTCA---AGGCAAAGATTCA-GGATAAGGAAGGAATCTCTGTGGA 403098 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| |||| ||||| || || || | ||||||| ||||| ||| ||||| Sbjct 403097 TCAGCAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGATGCACGCACGCTGGCAGATTA 403038 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||| || |||||||| || || | ||||| |||| || || || Sbjct 403037 CAACATTCAGAAGGAATCCACCCTTCACCTGGTGCTGCGGCTGAGGGGTGG 402987 >seq27 Length=1763170 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||| || ||||||| | || |||||||| || Sbjct 580897 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCC 580956 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| |||| | ||| ||||| || || || || || ||||| Sbjct 580957 GATACCATCGACAACGTTAAGGCAAAGATTCAA-GACAAGGAGGGCATCCCCCCAGACCA 581015 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| || | || || | ||||| | | ||| ||||| Sbjct 581016 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAA 581075 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || |||||||| || ||| | || || Sbjct 581076 TATCCAGAAGGAATCCACCCTCCATCTCGTCCT 581108 >seq464 Length=225985 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || || || | ||||| ||||||||||| || Sbjct 137820 ATGCAAATATTTGTGAAGACCCTTACGGGAAAGACGATCACCCTCGAAGTGGAGAGTTCG 137761 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || ||||| || ||| ||||| || |||||||| || ||||| Sbjct 137760 GATACCATTGATAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATTCCGCCGGACCAG 137701 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || ||||| || || | || || | | || | | ||| |||||| Sbjct 137700 CAGAGGCTGATCTTCGCCGGGAAGCAGCTTGAGGACGGCAGGACGCTCGCCGACTACAAT 137641 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||| || ||| | ||||| Sbjct 137640 ATTCAGAAGGAGTCCACCCTCCATCTGGTGCT 137609 >seq40 Length=1536145 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| || ||||| || || || || || || | |||||||| || ||||| || ||| Sbjct 682123 GACAAGGAGGGGATACCCCCAGATCAGCAAAGGCTGATTTTTGCTGGGAAACAGTTGGAA 682182 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||| ||| | | |||||||||||||||||||| || || || || | || | Sbjct 682183 GATGGTCGAACTCTAGCTGATTACAATATTCAAAAAGAGTCGACTCTTCACCTGGTTTTG 682242 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| || || |||| Sbjct 682243 AGGCTTAGGGGTGGAA 682258 >seq1029 Length=71094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| || || || || || || ||||| | | |||||||| || || || || ||| Sbjct 12380 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTTGCTGGAAAGCAGTTGGAA 12321 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||| || | | |||||||| ||||||||||| || || || ||| | || || Sbjct 12320 GATGGTCGAACCCTAGCTGATTACAACATTCAAAAAGAGTCAACACTGCATCTGGTTTTA 12261 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| || || |||| Sbjct 12260 AGGCTTAGGGGTGGAA 12245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432903831064355