Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq295 322 9e-83 seq210 277 3e-69 seq373 102 2e-16 seq4 86.0 1e-11 >seq295 Length=381392 Score = 322 bits (356), Expect = 9e-83 Identities = 583/843 (69%), Gaps = 15/843 (2%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| | |||| ||||||||||||||| | ||||| ||| ||| Sbjct 145104 ATGTACAAGAAGGCCCTCGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCTCCAGTGAC 145045 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAG-AACGAAAAGTTT---TTCCTCAAAAACATACT 42424 || |||| |||| || | ||||| || ||| || |||| || Sbjct 145044 CTCCCCCACTGGCTC-CACTCCCTCACCAACGATGAGCGCCACTTCATCTCCCACATCCT 144986 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 ||||||||||||||||| || ||||| ||| |||||||| |||| | | |||||| Sbjct 144985 CGCCTTCTTCGCCGCCTCCGATGGCATCGTCCTCGAGAACCTCGCCATCCGCTTCATGTC 144926 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 || || ||| ||||| ||| |||||||||||||||||| || || |||||| | Sbjct 144925 CGACGTCCAGATTCCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCGATCGAGAACAT 144866 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAA 42604 ||||| ||| ||||| || || ||| | | |||||| |||||| | ||| | Sbjct 144865 CCACTCCGAGATGTACTCCCTCCTCCTCGAATCCTACATCAAGGATCCAGACGAAAAAGA 144806 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA-TCAAGAAGAAGGCGGACTGGGCGC 42663 | || ||| ||| | ||||| | ||| ||| | | |||||||| | ||||| | Sbjct 144805 TCGCCTTTTCCGCGCCGTCGAGACCGT-CCCGGCAGTGACCAAGAAGGCCCAGTGGGCCC 144747 Query 42664 TCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 | ||||||| | ||| || | | |||| |||| | || || || ||| |||||| Sbjct 144746 TTCGGTGGATCGGGT---CCGCCGAATCCTTCGCCGAGCGTCTAGTTGCGTTTGCCGCCG 144690 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTG 42782 | ||||| ||||||||||| ||| ||||| ||| ||||||||||||||| || || Sbjct 144689 TTGAGGGGATCTTCTTCTCCGGCTCCTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCC 144630 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 || ||||| || ||||||||||| ||||| |||||| | | |||||||| || || | Sbjct 144629 TC-ATGCCGGGTCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGC 144571 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC 42902 ||||| ||||||||||| | ||| || ||||| | ||||| ||| |||| || || Sbjct 144570 GACTTCGCCTGCCTCCTCTACTC---CCTCCTCAACCGCAAGCTCTCTGAGGACCGCATC 144514 Query 42903 CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC 42962 | | |||||| | || ||||| || ||||||| ||||||| | | ||||||| Sbjct 144513 AAGTCGATCATCGCCGACGCCGTTGACATCGAGAGGGAGTTCGTTTGCGACGCGCTGCCG 144454 Query 42963 GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGAC 43022 ||| | ||||| || |||||| || | ||| || ||||||| ||| ||| || || Sbjct 144453 GTGGCGCTGGTGGGGATGAACGGGGATTTGATGAGCCAGTACATTGAGTTCGTGGCGGAT 144394 Query 43023 CATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTT 43082 | ||| || | | |||| | | | ||| | || || ||||||| Sbjct 144393 CGGCTCTTGGGGGCGCTGGGATGCGGGAAGTTGTACGGGGTGGCGAATCCATTCGACTGG 144334 Query 43083 ATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 |||||| || ||| | |||| ||||| || || ||||||||| | |||| || ||| Sbjct 144333 ATGGAGCTGATATCGCTTCAGGGGAAGACGAATTTCTTCGAGAAGAGGGTCGGAGAATAC 144274 Query 43143 CAG 43145 ||| Sbjct 144273 CAG 144271 >seq210 Length=498004 Score = 277 bits (306), Expect = 3e-69 Identities = 498/724 (69%), Gaps = 8/724 (1%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||||||||| || ||| |||||||| ||| || | |||||| Sbjct 322557 CTCGCCTTCTTCGCCGCCTCTGACGGTATCGTCCTCGAGAACCTAGCCGCCCGCTTCATG 322498 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || ||| | ||||| ||| ||| |||||||||||||||||||| || ||| Sbjct 322497 TCCGACGTCCAGATCGCCGAGGCCCGCGCCTTTTACGGCTTCCAGATAGCCATCGAAAAC 322438 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| |||| | |||| | | |||||| || || | ||| Sbjct 322437 ATCCACTCCGAGTTGTATTCTCTTTTGCTGGAATCCTACATCAAAGACCCTGACGAAAAG 322378 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | || || ||| | |||||| | || | ||||||||| | |||||| Sbjct 322377 GACCGCCTTTTTCGTGCCGTCGAGACGGTTCCGGCGGTGGCGAAGAAGGCCCAGTGGGCG 322318 Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 ||| |||||| || | ||| | |||| ||| | || || ||||| |||| Sbjct 322317 CTCCGGTGGATCCAGTCCTCGGACTCT---TTCGCGGAGCGCCTCGTGGCCTTCGCCGCT 322261 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGT 42781 || || || ||||||||||| ||| ||||| ||||||||||||||||||| || ||| Sbjct 322260 GTTGAAGGGATCTTCTTCTCCGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGAGGC 322201 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || ||||| || ||||| ||||| ||||| |||||| | | |||||||| || || | Sbjct 322200 CTC-ATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTG 322142 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 ||||| ||||||||||| | ||| || ||||| | ||||| | | |||| || | Sbjct 322141 CGACTTCGCCTGCCTCCTCTACTC---CCTCCTCAACCGCAAGCTCCCCGAGGACCGCAT 322085 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 | | | |||||| | || || || || ||||||| ||||||| || | || |||| Sbjct 322084 CAAGTCGATCATCGCCGACGCTGTCGACATCGAGAGGGAGTTCGTCTGCGACGCGTTGCC 322025 Query 42962 CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 |||| | || || || ||||| || | ||| || | |||||| ||| ||| || || Sbjct 322024 CGTGGCGCTTGTGGGGATGAATGGGGATTTGATGAGCCAATACATCGAGTTCGTGGCGGA 321965 Query 43022 CCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTT 43081 | |||| || | | |||| | | | ||| | || || ||||| | Sbjct 321964 TCGTCTCTTGGGGGCGTTGGGATGCGGGAAGTTGTACGGGGCAGCGAATCCGTTCGATTG 321905 Query 43082 TATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTA 43141 |||||| || ||| | | || ||||| || |||||||||||| | |||| ||||| Sbjct 321904 GATGGAGCTGATATCGCTCCAAGGGAAGACTAATTTTTTCGAGAAGAGGGTCGGGGACTA 321845 Query 43142 CCAG 43145 |||| Sbjct 321844 CCAG 321841 >seq373 Length=296750 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 42419 CATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTT 42478 ||| || ||||||||||||||||| ||| ||| || |||||||| ||| || | || Sbjct 269874 CATCCTCGCCTTCTTCGCCGCCTCCGACAACATCATCCTCGAGAACCTCGCCTCCCGCTT 269933 Query 42479 CATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGA 42538 |||| || || ||| ||||| ||| |||||||||||| ||||||||||| || Sbjct 269934 CATGTCCGATGTCCAGATTGCCGAGGCCCGCGCCTTCTACGGCTTTCAGATAGCCATCGA 269993 Query 42539 GAACGTGCACTCTGAGGTGTA 42559 |||| | ||||| ||| |||| Sbjct 269994 GAACATCCACTCCGAGATGTA 270014 >seq4 Length=3300150 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 42418 ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGT 42477 |||| || ||||||||||||||||| ||| | | || |||||||| ||| || | | Sbjct 2749374 ACATCCTCGCCTTCTTCGCCGCCTCCAACGACCTCGTTCTCGAGAACCTCGCCTCCCGCT 2749433 Query 42478 TCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAG 42537 ||||| || || || |||||| ||| ||||||||||| |||||||||| | Sbjct 2749434 TCATGTCCGACGTCTAGATTGCTGAGGCTCGCCCTTTCTACGGCTTTTAGATAGCCATTG 2749493 Query 42538 AGAACGTGCACTCTGAGGTGTA 42559 |||| | ||||| ||| |||| Sbjct 2749494 AGAATATCCACTCCGAGATGTA 2749515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943391118855920