Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq121 102 6e-17 seq27 84.2 2e-11 >seq121 Length=770561 Score = 102 bits (112), Expect = 6e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||||||||||||||| ||||| ||| |||||||||||||||||||||||| Sbjct 402987 CCACCCCTCAGCCGCAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCC 403046 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 | || | || || | ||||| || ||||| || || |||||||||||||| Sbjct 403047 AGCGTGCGTGCATCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGATCCAC 403102 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/236 (69%), Gaps = 18/236 (8%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || || || || ||||| || |||||| |||||| || |||||||| |||||| Sbjct 403443 CCGCCCCTGAGGCGGAGAACCAGGTGCAGCGTGGACTCCTTTTGGATGTTGTAGTCTGCC 403502 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | ||||||| ||||| || ||||| ||||||||||||||||| || Sbjct 403503 AGGGTGCGGCCATCGTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGGG 403562 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---G 34077 | | |||||| ||| | | | || |||| |||| ||||| | | || | Sbjct 403563 ATCCCCTCTTTATCC-TGAATCTTAGCTT--------TCACGTTATCAATGGTGTCTGAG 403613 Query 34078 CATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || ||| || ||||| || ||||| || || ||||||||||| ||||| Sbjct 403614 CTCTCAACCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 403669 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| | || || ||||| || || ||| ||||||||| |||||||||||||| Sbjct 403215 CCGCCTCTTAATCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGTATGTTGTAATCTGCT 403274 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| || | || || | ||||| || ||||| |||||||||||||| || Sbjct 403275 AATGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAAATCAGGCGCTGCTGGTC 403327 >seq27 Length=1763170 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||||||||| ||| |||||||||||||||||||| |||| || Sbjct 581569 AGGCGGAGCACCAGATGAAGAGTGGATTCCTTCTGAATGTTGTAATCCGCCAGGGTGCGG 581510 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| ||||| || ||||| |||| |||||||| || || | | ||| Sbjct 581509 CCATCCTCCAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCC 581450 Query 34030 TTGTCCATAATTTT 34043 |||||| |||||| Sbjct 581449 TTGTCCTGAATTTT 581436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396673730134234