Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq474 122 9e-23 seq1025 116 4e-21 seq13 116 4e-21 seq129 107 2e-18 seq27 105 7e-18 seq121 100 3e-16 seq464 96.9 4e-15 >seq474 Length=218880 Score = 122 bits (134), Expect = 9e-23 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| || || || || |||| || |||||||| || ||||| Sbjct 25110 CTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 25169 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 25170 GATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 25228 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || ||||| |||| ||||| || || ||||| || ||||| | Sbjct 25229 TGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTCTTCCCCGTCAGGGTCTTCA 25288 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 25289 CGAAGATCTGCATGTT 25304 >seq1025 Length=71329 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || ||||| |||| || |||||||| || ||||| Sbjct 8469 CTCCTTCTGTATGTTGTAGTCAGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 8410 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 8409 GATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATT 8350 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || ||||| || | ||||| || || ||||| || ||||| || Sbjct 8349 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTCTTCAC 8290 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 8289 GAAGATCTGCAT 8278 >seq13 Length=2550137 Score = 116 bits (128), Expect = 4e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || ||||| || || ||||| Sbjct 1356628 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAA 1356687 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 1356688 GATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 1356746 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || |||| |||||||| |||||||| || ||||| | Sbjct 1356747 TGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCA 1356806 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 1356807 CGAAGATCTGCATCTT 1356822 >seq129 Length=753513 Score = 107 bits (118), Expect = 2e-18 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | || |||||||||||| || || || ||||| || ||| | || || Sbjct 556246 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTATAGTCCGCCAGCGTGCGCCCATCCTCC 556305 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 ||||| |||||||| || ||||| | |||||| || | || | || |||||||||| || Sbjct 556306 AGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCC-TG 556364 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 | | || | || | | | | |||||| |||| || || || | |||||||| Sbjct 556365 AATCTTAGCCTTCACATTATCAATCGTGTCGGAGCTC---TCAACTTCCAGAGTGATGGT 556421 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || ||||| |||||||| ||||| Sbjct 556422 CTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 556454 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 7/195 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||||||||||| ||| || | || || || || || ||||| || Sbjct 556491 CTCTTTCTGGATGTTGTAATCAGCCAAAGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAA 556550 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| | ||||||||| | || | || |||||||| | ||| | || | || | Sbjct 556551 GATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGT-CTTGAATCTTAGCCTTCACAT 556609 Query 42136 TCGCCACCGTGTC--GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | |||||| |||| || || || | |||||||| ||||| || || ||||| Sbjct 556610 TATCAATCGTGTCGAGCTC---TCAACTTCCAGGGTGATGGTCTTGCCAGTAAGGGTCTT 556666 Query 42194 TACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 556667 CACAAAGATCTGCAT 556681 >seq27 Length=1763170 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || |||||||| || || || || || |||| || |||||||| || || || Sbjct 581087 TCCTTCTGGATATTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 581028 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || ||||||||||| | || | || |||||||| | ||| | |||| | | ||| Sbjct 581027 ATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGT-CTTGAATCTTTGCCTTAACGTT 580969 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || ||| || ||||| || | |||||||| ||||| || || ||||| || Sbjct 580968 GTCGATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTGAC 580909 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 580908 GAAGATCTGCAT 580897 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| ||| | ||| ||||| ||||| |||||||| ||||| || || | || || Sbjct 581561 CACCAGATGAAGAGTGGATTCCTTCTGAATGTTGTAATCCGCCAGGGTGCGGCCATCCTC 581502 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||||||||| || || | ||||||||||| | || | | |||||||||| | Sbjct 581501 CAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCCTTGTCC-T 581443 Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 || |||| | || | | | | ||| || |||| || || || | ||||||| Sbjct 581442 GAATTTTGGCCTTCACATTGTCAATCGTATCCGAGCTC---TCGACCTCAAGGGTGATGG 581386 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || || || || |||||||| ||||| Sbjct 581385 TCTTCCCAGTGAGGGTTTTGACAAAGATCTGCAT 581352 >seq121 Length=770561 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||||||| || | |||| || | ||| |||||| || || |||||||| || Sbjct 403215 CCGCCTCTTAATCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGTATGTTGTAATCTGCT 403274 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || |||||||| ||||| || || || ||||||||||| | || Sbjct 403275 AATGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAAATCAGGCGCTGCTGGTCAGGTGCG 403334 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | || |||||||||| ||| || ||| | || | | ||||| |||| || Sbjct 403335 ATGCCCTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCTGAGCTC---TCA 403391 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||||| || || || || ||||| || ||||| ||||| Sbjct 403392 ACCTCAAGAGTGATGGTCTTCCCTGTAAGGGTCTTGACGAAGATCTGCAT 403441 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| || | ||| ||||| ||||| |||||||| ||||| || || | Sbjct 402999 CGCAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTGCA 403058 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| ||||| || || || |||||||| || | | | | ||||| Sbjct 403059 TCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGATCCACAGAGATTCCTTCCTTA 403118 Query 42114 TCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCGACCGT 42169 ||| ||| | |||| |||| | | | |||||| ||| ||||| || | || Sbjct 403119 TCC-TGAATCTTTGCCTTGACATTATCGATGGTGTCGGAGCTC---TCCACCTCCAAAGT 403174 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || ||||| | |||||||||||||| ||||| Sbjct 403175 GATCGTCTTCCCCGTCAAAGTCTTTACAAAGATCTGCAT 403213 >seq464 Length=225985 Score = 96.9 bits (106), Expect = 4e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| ||| | ||| |||||| ||||||||||| || || || |||| |||| || Sbjct 137611 CACCAGATGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGCGAGCGTCCTGCCGTCCTC 137670 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| || || | ||||||||| | || | | |||||||||| Sbjct 137671 AAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGAATCCCCTCCTTGTCCTG 137730 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGT 42175 ||| || || | | | | || || ||| ||||| |||| ||||| || Sbjct 137731 GATCTTCGCCTTCACATTATCAATGGTATC---CGAACTCTCCACTTCGAGGGTGATCGT 137787 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || ||||| ||||| |||||||| Sbjct 137788 CTTTCCCGTAAGGGTCTTCACAAATATTTGCAT 137820 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/196 (72%), Gaps = 9/196 (5%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || || ||||| || || || || |||| || || ||||| || ||||| Sbjct 137857 CTCCTTTTGGATGTTATAATCGGCGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 137916 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||| ||| ||| || |||| ||| Sbjct 137917 GATCAGGCGCTGCTGGTCCG-GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGA-CGT 137974 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| |||| || || || | ||||| || ||||| || || |||| Sbjct 137975 TGTCGATCGTGTCCGAGCTC---TCGACCTCCAAGGTGATCGTCTTGCCGGTGAGGGTCT 138031 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||||||||| Sbjct 138032 TGACGAAGATTTGCAT 138047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542667434719280