Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq295 127 2e-24 seq9 111 2e-19 seq39 109 6e-19 seq210 105 8e-18 seq652 89.7 6e-13 seq617 89.7 6e-13 >seq295 Length=381392 Score = 127 bits (140), Expect = 2e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 144574 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGGCC 144633 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | |||| |||||| || |||||||||||||| ||||| || Sbjct 144634 GCGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCGGAGAAGAAGATCCCCTCAACGGC 144693 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 |||||||||| || |||||||||||||| Sbjct 144694 GGCAAACGCAACTAGACGCTCGGCGAAGGA 144723 >seq9 Length=2675258 Score = 111 bits (122), Expect = 2e-19 Identities = 220/319 (69%), Gaps = 10/319 (3%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 ||||||||||| || ||||| || || || ||||| || |||| ||||||||| | | Sbjct 1603269 AAACCATCCATTTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTCCCA--C 1603326 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | || |||| ||| ||| | ||||| ||||||||||| || ||||||||||| | Sbjct 1603327 CTCCGAGACCGGCACCGCGCTGCCTCCCCACCGCATCAATCTCGTCGATGAAGACAATGC 1603386 Query 9400 ATGGTTGATTTTCG--CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 | || | ||||| ||| | || || | ||| || |||| || || || || Sbjct 1603387 AGGG--GGCTTTCGACTTGGCCTTCTCGAACAAATCCCGGACCCGAGAAGCTCCAACTCC 1603444 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 || || | |||||| || | | ||||| || || |||||| || | || || Sbjct 1603445 CACGAAGAGCTCCACGAATTCGGAGGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCGCC 1603504 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 || | ||| ||||| || |||||||| || || || || ||| | | || |||| | Sbjct 1603505 GGCCACGGCCCGGGCAAGGAGAGTCTTTCCGGTGCCGGGAGGACCGACCAAGA-GGCAGC 1603563 Query 9578 CCGT-GGAATCTTGGCGCC 9595 | | || ||||||||||| Sbjct 1603564 CTTTGGGGATCTTGGCGCC 1603582 >seq39 Length=1554931 Score = 109 bits (120), Expect = 6e-19 Identities = 287/429 (67%), Gaps = 17/429 (4%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCA 9281 ||| ||||| || | ||||| || || || || |||| || || || ||| || || Sbjct 271811 ATCTAGGATGTCTGCACGATTGGTGGCTGCAATTACAATTATTCCAGTATTTCCTT--CA 271868 Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || ||||| || || |||| ||||| || | ||||||||| | | Sbjct 271869 AACCCATCCATTTCAGTCAACAGCTGATTAAGGGTTTGCTCTCTCTCATCATTCCCA--C 271926 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | || | | | |||| |||| || |||||||||||||| | |||| || | Sbjct 271927 CTCCAATTCCTGTTCCTCTTTGCCTTCCAACAGCATCAATCTCATCCACAAAGATGATGC 271986 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | ||| ||| || ||| | | ||| ||||| || || | | || || ||||||| Sbjct 271987 AAGGTGCATTCTCTTTGGCCTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACACCAA 272046 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9518 |||||||||| ||||| | | | ||| |||| || || || ||| | |||||| Sbjct 272047 CAAACATCTCTACAAACTCAGATCCAGAA-ATTGAGAAAAATGGAACACCTGCTTCACCA 272105 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 ||||| || || || | || || || || ||||| ||| || || ||||| Sbjct 272106 GCAATTGCCTTAGCAAGCAACGTTTTCCCAGTTCCTGGAGGACCGATAAGAAGAACACCC 272165 Query 9579 CGTGGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636 ||||| || | || || | ||| | ||||| |||| ||| | || ||||||| Sbjct 272166 TTTGGAA--TTCGTGCACCTACTGCAGTAAACCTCTCTGGTTTCTTCAAGAACTCCACAA 272223 Query 9637 TCTCTTCCA 9645 |||||| Sbjct 272224 ---CTTCCA 272229 >seq210 Length=498004 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || ||||| ||||| |||||||| || Sbjct 322144 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGCATGAGGCC 322203 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || | |||||| || |||||||||||||| || || ||| Sbjct 322204 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATCCCTTCAACAGC 322263 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAG 117435 || || || | |||||||| ||||| ||| Sbjct 322264 GGCGAAGGCCACGAGGCGCTCCGCGAAAGAG 322294 >seq652 Length=146776 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 106466 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 106525 ||||||||||||||||| ||||| || ||| | |||| |||||| || || ||| Sbjct 111787 ATTGATGCCAAATTGCACACAGCAGTTTCAGTAGGACTTGTGAACTCTATTATCTCAGTA 111728 Query 106526 CACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCA 106585 || ||||| ||| ||| || ||||||| ||| | ||| ||||| ||| | ||||| | | Sbjct 111727 CATAAGTTTGAAGACTTGATAGTCCCCAGATTTTGTTGATTACTTTTTCTATTGCAAGTA 111668 Query 106586 TCCT 106589 |||| Sbjct 111667 TCCT 111664 >seq617 Length=160175 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 106438 CTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATC 106497 || ||| ||||| || ||| | || ||||||||||||||||| ||||| || ||| Sbjct 54763 CTTTTCTCTGACAAACCGTGGTAAAGCAATTGATGCCAAATTGCACACAGCAGTTTCAGT 54704 Query 106498 CTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATT 106557 | |||| |||||| || || ||||| ||||| ||| || || ||||||| ||| Sbjct 54703 AGGACTTGTGAACTCTATTATCTCAGTACATAAGTTTGAAGATTTGATAGTCCCCAGATT 54644 Query 106558 CTTTTGGTTACTCTTTTTGTTGCACGCATCCT 106589 | ||| ||||| ||| | ||||| | ||||| Sbjct 54643 TTGTTGATTACTTTTTCTATTGCAGGTATCCT 54612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589388481401080