Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq652 100 3e-16 seq617 100 3e-16 >seq652 Length=146776 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | |||||||| ||| | || | ||||| || ||||| ||| Sbjct 110490 CCCCCTTGATCAACATAACGAGCAGTATTATTAAACACCCGCAACATCGGAACAATGCCA 110431 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| || || ||||||||| || |||| | ||| ||| || |||| Sbjct 110430 TTAGAAGTTCCATTTGTCCCACGAATATAACTACCTGTAGCACGTATGTTATGAACTGAA 110371 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || || ||| | |||||| | || || ||||| ||| Sbjct 110370 ACACCAATTCCTCCAGCAGACTTGCTTATGACAGCACATTCCATCAGAGTGTCATAGATT 110311 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 110310 CCCTCAATACTATCATCTTTCAT 110288 >seq617 Length=160175 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| ||| | || || | ||| || ||||| ||| Sbjct 53368 CCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCTCAGCATCGGCACAATGCCA 53309 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| || || ||||||||| || | || | ||||||| || |||| Sbjct 53308 TTAGAAGTTCCATTTGTCCCACGAATATAACTACCCGTGGCACGTATATTATGAACTGAA 53249 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || || ||| | |||||| || || || ||||| ||| Sbjct 53248 ACACCAATTCCTCCAGCAGACTTGCTTATAACAGCACATTCCTTCAGAGTGTCATAGATT 53189 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 53188 CCCTCAATACTATCATCTTTCAT 53166 Score = 82.4 bits (90), Expect = 9e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| |||| |||||||||||| || || |||||| | ||||| | || | ||| | Sbjct 53040 AGTGCCTGCATTAAATAATGTAGGGGAGGCATGAGTGAACCAGCGTTGAGACATCAAATG 52981 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 |||||| | ||||||||| ||||| | ||| || || || | || || | ||| | Sbjct 52980 GTATGTTCTGAGAACAGAATCAATATCATCCTTG-TGGATTCCAACAGCAACTCTCATCA 52922 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | ||| || || || || | ||| | | |||||| ||||| ||| | || | Sbjct 52921 GCATGTGTTGCGGCCTCTCTACTACTTTTCCAGAAACTTTCAAGAGATAGGATCTCTCAA 52862 Query 48778 ATGTTTTAAAACCAAAATA 48796 || |||||||||||||| Sbjct 52861 GAGTCTTAAAACCAAAATA 52843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561544463843880