Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq121 114 1e-20 seq1029 111 1e-19 seq40 111 1e-19 seq680 98.7 8e-16 seq363 98.7 8e-16 seq129 95.1 9e-15 seq464 89.7 4e-13 seq27 86.0 5e-12 seq1025 82.4 6e-11 >seq121 Length=770561 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||| |||||||| | ||| | | | | || |||| |||||| || ||||| Sbjct 402795 TCTTTCTGAATGTTGTAATCTGCAAGAGTGCAACCATCCTCCAGCTGCTTCCCAGCAAAA 402854 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || ||||| ||||||| || | |||||||||||| ||||||| || ||| | Sbjct 402855 ATGAGGCGCTGCTGATCCGGGGATATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTA 402914 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || ||||||||||| ||||| || || || || | ||| || ||| Sbjct 402915 TCGATAGTGTCAGAACTCTCCACCTCCAAAGTAATGGTCTTCCCTGTAAGAGTCTTCACA 402974 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 402975 AAGATCTGCAT 402985 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| ||||||| ||||| || || ||| || || ||||| |||||||| | Sbjct 402986 GCCACCCCTCAGCCGCAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGC 403045 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || || | |||||| || ||||| || || ||||| |||||| | Sbjct 403046 CAGCGTGCGTGCATCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGATCCACAGA 403105 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | || ||||| || ||||||| || ||| | | | | || || |||||| Sbjct 403106 GATTCCTTCCTTATCCTGAATCTTTGCCTTGACATTATCGATGGTGTCGGAGCTCTCCAC 403165 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| || ||||||||||| |||||||| |||||||| Sbjct 403166 CTCCAAAGTGATCGTCTTCCCCGTCAAAGTCTTTACAAAGATCTGCAT 403213 >seq1029 Length=71094 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| || |||| ||| || || |||||||||||| |||||||||| | Sbjct 12247 CCACCCCTAAGCCTTAAAACCAGATGCAGTGTTGACTCTTTTTGAATGTTGTAATCAGCT 12306 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||||| | || ||||||||||| || ||||| |||| || |||||||| | ||| Sbjct 12307 AGGGTTCGACCATCTTCCAACTGCTTTCCAGCAAAAATCAATCTTTGTTGATCTGGGGGT 12366 Query 48660 ACGCCCTCCTTGTC 48673 | ||||||||||| Sbjct 12367 ATACCCTCCTTGTC 12380 >seq40 Length=1536145 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| ||| |||| || || || ||||||||||||||||||||||| | Sbjct 682256 CCACCCCTAAGCCTCAAAACCAGGTGAAGAGTCGACTCTTTTTGAATATTGTAATCAGCT 682197 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||||| | || |||||||| || || ||||| ||||| | || ||||| | ||| Sbjct 682196 AGAGTTCGACCATCTTCCAACTGTTTCCCAGCAAAAATCAGCCTTTGCTGATCTGGGGGT 682137 Query 48660 ACGCCCTCCTTGTC 48673 | ||||||||||| Sbjct 682136 ATCCCCTCCTTGTC 682123 >seq680 Length=135211 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || | || |||| ||| ||||| |||||||||||| |||||||||| Sbjct 22623 CCACCCCTAAGTCTTAAAACCAGATGCAGCGTTGACTCTTTTTGAATGTTGTAATCAGCC 22564 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | ||||| | || ||||||||||| || || || |||| || |||||||| | ||| Sbjct 22563 AAGGTTCGACCATCCTCCAACTGCTTTCCAGCGAAAATCAATCTTTGTTGATCTGGGGGT 22504 Query 48660 ACGCCCTCCTTGTC 48673 | ||||||||||| Sbjct 22503 ATACCCTCCTTGTC 22490 >seq363 Length=303632 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| ||| |||| || || || |||||| |||||||||||||||| | Sbjct 177753 CCACCCCTAAGCCTCAAAACCAGGTGAAGAGTCGACTCTTTCTGAATATTGTAATCAGCT 177812 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||||| | || |||||||| || || ||||| || | | ||| |||||| ||| Sbjct 177813 AGGGTTCGACCATCTTCCAACTGTTTCCCAGCAAAAATTAACCTCTGCTGATCCAAGGGT 177872 Query 48660 ACGCCCTCCTTGTC 48673 | ||||||||||| Sbjct 177873 ATCCCCTCCTTGTC 177886 >seq129 Length=753513 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| ||||| | |||||||| || || ||| |||||||| || || || | Sbjct 556228 CCACCCCGAAGCCGGAGGACCAAATGAAGAGTAGACTCCTTTTGAATGTTATAGTCCGCC 556287 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| ||| ||||| ||||| || || | ||| ||||||| |||| Sbjct 556288 AGCGTGCGCCCATCCTCCAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCCGGGGGA 556347 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| || ||| | | | | || || ||| || Sbjct 556348 ATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTATCAATCGTGTCGGAGCTCTCAACT 556407 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || || | || || ||||| |||||||| Sbjct 556408 TCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 556454 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| ||||||| || | || || || |||||| || |||||||| |||| | Sbjct 556683 CCACCCCTGAGCCGCAGGACAAGGTGAAGAGTTGACTCTTTCTGGATATTGTAGTCAGCT 556742 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | ||| | || || | || || ||||||||||| || | ||| || || | |||| Sbjct 556743 AAAGTGCGACCATCCTCAAGTTGTTTGCCGGCAAATATGAGCCTCTGCTGGTCAGGGGGA 556802 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||| || || || || ||| | | | | || || ||| || Sbjct 556803 ATGCCCTCCTTATCCTGGATTTTGGCCTTAACATTATCAATTGTGTCCGAGCTCTCAACT 556862 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || || || | ||| || ||||| ||||||||| Sbjct 556863 TCAAGGGTGATGGTCTTGCCTGTGAGAGTCTTAACAAAGATCTGCATC 556910 >seq464 Length=225985 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || ||| ||| || ||||||||||| || | || | | Sbjct 137603 AGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGCGAGCGTCCTG 137662 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || ||||| | ||| || |||| |||| |||||| Sbjct 137663 CCGTCCTCAAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGAATCCCCTCC 137722 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | | || || |||||| || | || Sbjct 137723 TTGTCCTGGATCTTCGCCTTCACATTATCAATGGTATCCGAACTCTCCACTTCGAGGGTG 137782 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| |||||||| | || || ||||| || |||||| Sbjct 137783 ATCGTCTTTCCCGTAAGGGTCTTCACAAATATTTGCATC 137821 >seq27 Length=1763170 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| || || || |||||||| || | || | || |||| || | ||| Sbjct 581100 ATGGAGGGTGGATTCCTTCTGGATATTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTG 581041 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| |||||||| ||||| ||||| || || | ||| | |||||||||||| |||||| Sbjct 581040 CTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCTT 580981 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || || | | | || || | ||||||||| | || || || || || || Sbjct 580980 TGCCTTAACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGGT 580921 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 | ||| || || || ||||||||| Sbjct 580920 GAGAGTCTTGACGAAGATCTGCATC 580896 >seq1025 Length=71329 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || || | || | ||| || ||| ||| || || || ||||| |||| Sbjct 8506 CGCCGCCGCGGAGGCGGAGGACGAGATGGAGGGTGGACTCCTTCTGTATGTTGTAGTCAG 8447 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| || | |||||| ||||| || || || ||||| || |||| | Sbjct 8446 CGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAG 8387 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || ||| | | | || || | ||||| Sbjct 8386 GGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGACTCCA 8327 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| | || || || || ||||| | || || || || |||||||| ||| Sbjct 8326 CCTCAAGGGTGATAGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATGGTG 8274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380564714111391