Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq210 174 3e-38 seq295 150 3e-31 >seq210 Length=498004 Score = 174 bits (192), Expect = 3e-38 Identities = 555/853 (65%), Gaps = 25/853 (3%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 |||||||||||||||||||| ||| |||||| ||||| ||| | || || || Sbjct 322680 TGGGAGATGTACAAGAAGGCCGTCGCCTCTTTCTGGACAGCCGAGGAGGTCGACCTCTCC 322621 Query 25540 AAGGACATGGACGGCTGGT---ACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 ||| | | |||| || | || || ||||||| || || || || Sbjct 322620 GCCGACCTCCCCCACTGGCTCCACACCCTCACCCCCGACGAGCGCCACTTCATCTCCCAC 322561 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| || |||||||| ||||| || |||||| || || | ||| Sbjct 322560 GTCCTCGCCTTCTTCGCCGCCTCTGACGGTATCGTCCTCGAGAACCTAGCCGCCCGCTTC 322501 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | || || ||| || |||||| || ||||| |||||||| ||||||||| Sbjct 322500 ATGTCCGACGTCCAGATCGCCGAGGCCCGCGCCTTTTACGGCTTCCAGATAGCCATCGAA 322441 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGA---CGTACATTACAGACGTCGCC 25773 || | ||||| ||| ||||| | ||| || || | ||||| | |||| | | Sbjct 322440 AACATCCACTCCGAGTTGTATTCT---CTTTTGCTGGAATCCTACATCAAAGACCCTGAC 322384 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA-TCAAGAGGAAGGCGCG 25832 || | || || || ||| ||||| ||||| || || || | || |||||| | Sbjct 322383 GAAAAGGACCGCCTTTTTCGTGCCGTCGAG-ACGGTTCCGGCGGTGGCGAAGAAGGCCCA 322325 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| | ||||||| ||| | | || | || | ||||| || || ||||| Sbjct 322324 GTGGGCGCTCCGGTGGATC--CAGTCCTCGGACT-CTTTCGCGGAGCGCCTCGTGGCCTT 322268 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGC 25951 || ||||| || || ||||| ||| ||| || || ||| ||||||||||||||||| Sbjct 322267 CGCCGCTGTTGAAGGGATCTTCTTCTCCGGCTCCTTCTGCT-CCATCTTCTGGCTCAAGA 322209 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || |||||| || || ||||| ||||||||||||||| | | |||||||| Sbjct 322208 AGCGAGGCCTCATGCCGGGCCTC-ACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 322150 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 |||||| | || || |||||||| |||||| | || | | || | || || | | | Sbjct 322149 CTCCACTGCGACTTCGCCTGCCTCCTCTACTC---CCTCCTCAACCGC-AAGCTCCCCGA 322094 Query 26071 GAGACCGTCTACAGT--ATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128 | ||||| | ||| |||||| || ||||| || ||||||| |||||| Sbjct 322093 G-GACCGCATCAAGTCGATCATCGCCGACGCTGTCGACATCGAGAGGGAGTTCGTCTGCG 322035 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGT 26188 |||| ||||| | |||||||||||||| |||| Sbjct 322034 ACGCGTTGCCCGTGGCGCTTGTGGGGATGAATGGGGATTTGATGAGCCAATACATCGAGT 321975 Query 26189 ATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACC 26248 ||||| || | ||| || | | ||||| || | | ||| | | | || | Sbjct 321974 TCGTGGCGGATCGTCTCTTGGGGGCGTTGGGATGCGGGAAGTTGTACGGGGCAGCGAATC 321915 Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308 ||||||| | ||||| |||||| | |||||||||| || || || || ||||||| Sbjct 321914 CGTTCGATTGGATGGAGCTGATATCGCTCCAAGGGAAGACTAATTTTTTCGAGAAGAGGG 321855 Query 26309 TCGGCGACTATCA 26321 |||| ||||| || Sbjct 321854 TCGGGGACTACCA 321842 >seq295 Length=381392 Score = 150 bits (166), Expect = 3e-31 Identities = 544/849 (64%), Gaps = 17/849 (2%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 |||||||||||||||||||| | ||| ||||||||||| ||| | || || || Sbjct 145110 TGGGAGATGTACAAGAAGGCCCTCGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCTCC 145051 Query 25540 AAGGACATGGACGGCTGGT---ACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | ||| | | |||| || | || |||| || |||| || || || || Sbjct 145050 AGTGACCTCCCCCACTGGCTCCACTCCCTCACCAACGATGAGCGCCACTTCATCTCCCAC 144991 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 | | || ||||| || ||||| ||||| || || |||||| || | | ||| Sbjct 144990 ATCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCCTCGAGAACCTCGCCATCCGCTTC 144931 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | || || ||| |||||| |||||||| |||||||| || ||||| Sbjct 144930 ATGTCCGACGTCCAGATTCCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCGATCGAG 144871 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAG 25776 || | ||||| ||| |||| || || || | ||||| | || | ||| Sbjct 144870 AACATCCACTCCGAGATGTACTCCCTCCTCCTCGAATCCTACATCAAGGATCCAGACGAA 144811 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA-TCAAGAGGAAGGCGCGGTG 25835 | |||||| || || | ||| ||||| | | ||| ||| | | | |||||| | ||| Sbjct 144810 AAAGATCGCCTTTTCCGCGCCGTCGAGACCGT-CCCGGCAGTGACCAAGAAGGCCCAGTG 144752 Query 25836 GGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 |||| | ||||||| | | | || | || | |||||| || || || ||||| Sbjct 144751 GGCCCTTCGGTGGATCGG--GTCCGC-CGAATCCTTCGCCGAGCGTCTAGTTGCGTTTGC 144695 Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGA 25954 || || ||||| ||||| ||| ||| || || ||| | ||||||||||||||| || Sbjct 144694 CGCCGTTGAGGGGATCTTCTTCTCCGGCTCCTTCTGCT-CTATCTTCTGGCTCAAGAAGC 144636 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 || |||||| || || ||| ||||||||||||||| | | |||||||| |||| Sbjct 144635 GCGGCCTCATGCCGGGTCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCC 144576 Query 26015 ACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGA 26074 || | || || |||||||| |||||| | || | | || ||| | |||| || Sbjct 144575 ACTGCGACTTCGCCTGCCTCCTCTACTC---CCTCCTCAACCGCAAGC--TCTCTGAGGA 144521 Query 26075 CCGTCTACAGT--ATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNN 26132 ||| | ||| |||||| || || || || ||||||| |||||| Sbjct 144520 CCGCATCAAGTCGATCATCGCCGACGCCGTTGACATCGAGAGGGAGTTCGTTTGCGACGC 144461 Query 26133 NNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGT 26192 |||| |||||| | |||||||| |||||||||| || Sbjct 144460 GCTGCCGGTGGCGCTGGTGGGGATGAACGGGGATTTGATGAGCCAGTACATTGAGTTCGT 144401 Query 26193 GGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTT 26252 ||| || | || || | ||||||| || | | ||| | | | || || || Sbjct 144400 GGCGGATCGGCTCTTGGGGGCGCTGGGATGCGGGAAGTTGTACGGGGTGGCGAATCCATT 144341 Query 26253 CGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGG 26312 ||||| ||||| |||||| | | |||||||| || ||||| || ||||||||||| Sbjct 144340 CGACTGGATGGAGCTGATATCGCTTCAGGGGAAGACGAATTTCTTCGAGAAGAGGGTCGG 144281 Query 26313 CGACTATCA 26321 || || || Sbjct 144280 AGAATACCA 144272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927912274652480