Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_019912.1 Length=36932 Score E Sequences producing significant alignments: (Bits) Value seq7757 322 1e-83 seq31478 84.2 5e-12 >seq7757 Length=3350 Score = 322 bits (356), Expect = 1e-83 Identities = 441/605 (73%), Gaps = 16/605 (3%) Strand=Plus/Plus Query 2696 GAACTaaaaaaagaaacatccgaaataaaagaagaggctggcaaaatttctactaaacta 2755 ||| | | ||||| ||| | ||||| |||| ||| ||||| ||||| || || || || Sbjct 2756 GAATTTATAAAAGTTACAACTGAAATTAAAGCAGAAGCTGGGAAAATCTCGACAAAGTTA 2815 Query 2756 gaaaaagTAGAAGCGCGCACGGTTGGTGTTGAAAATTGGCTGATTAATACAGGCCCAAAC 2815 || | || || || || || || || |||||||| ||||| || ||||||| |||||| Sbjct 2816 GAGCAGGTTGAGGCTCGTACTGTAGGCGTTGAAAACTGGCTAATCCATACAGGGCCAAAC 2875 Query 2816 GAAAAACCACAAACAATTGGTATGATCGGCGGTGCTCAAGTAAATAAAGCTAAATTCATC 2875 ||||| || ||||||||||| ||| || ||||| ||||| || || ||| | | | Sbjct 2876 GAAAAGCCGCAAACAATTGGAATGTCTGGGGGTGCACAAGTCAACAAGGCTGG-TCAAGC 2934 Query 2876 GTACAGCCTGGTGAATACATTGTATTAGAATGTTTGGATCATACTGACTCTTTCTATCAA 2935 || | ||| || ||||| | |||||||| |||||||| ||||||||||||||| Sbjct 2935 GTTCT--CTGAGGATTACATAATCGTAGAATGTACAGATCATACCGACTCTTTCTATCAA 2992 Query 2936 TTCCATTTAGATAACACAAAAATGGGTGACTTTGAAAAAGATAAAGATATGACTATATCT 2995 |||||||||||||| || |||||||| ||||||||||||| ||||||||||| | | Sbjct 2993 TTCCATTTAGATAATACTAAAATGGGAGACTTTGAAAAAGCGAAAGATATGACATTCAGT 3052 Query 2996 ATTGATATGCAAAATGATTATCAAGTTGA-CTTTTTGTTATTTCAATTTATCAACGGTGT 3054 || ||||||||||| || || | |||| || ||| |||| |||||||| || || || Sbjct 3053 ATCGATATGCAAAACGACGTTCCAATTGATCTAATTG-TATTCCAATTTATTAATGGAGT 3111 Query 3055 ATGGAATGAGAA--TGTACAAAAAGGGATACCC-GCATCAAGTGCATGGAAGCGTGAG-T 3110 |||| || || ||||||| | ||| ||| | | | | ||| | ||| | Sbjct 3112 GTGGACAGAAAACTTGTACAATA---GATTCCCTGTCGCTAAT---TGGTCTAG-GAGAT 3164 Query 3111 CATGGACGTTTAAAGTTGATCCGAAAGCCACAGGCTGGGGATTAAGAATAAGGTTTGCTA 3170 ||| || || || ||||| | ||| || || |||||||| || |||| |||| | Sbjct 3165 CATTTACATTCAAGATTGATGCACGAGCAACTGGATGGGGATTGCGATTAAGATTTGAAA 3224 Query 3171 GAAATGCAAATTCTGTAGGTAAAAGATTGCGTATGAAAAAAGCAAAACTTGAAAAAGGAT 3230 |||||| |||||| ||||| | ||| ||| | || ||||| ||||| |||||||| | Sbjct 3225 GAAATGAAAATTCAAAGGGTAAGAAATTTCGTTTTAAGAAAGCTAAACTAGAAAAAGGTT 3284 Query 3231 CAATACCTACAGACTTTTCAAAGTCAACTTATGAATTAGAACAAAGTTTCAACGGCGTAA 3290 | | || |||||||| |||||||| ||||| ||||| |||||| | || || | | Sbjct 3285 CTGTTCCAACAGACTTCAGCAAGTCAACATATGAGTTAGAGCAAAGTGTGAATGGAATTA 3344 Query 3291 AAGAA 3295 ||||| Sbjct 3345 AAGAA 3349 Score = 176 bits (194), Expect = 1e-39 Identities = 381/563 (68%), Gaps = 9/563 (2%) Strand=Plus/Plus Query 1232 GATCCTCTAACTTTATTAAAGAAAACTGCAACTCTATTTAACTTAGAATTACAGTACCGT 1291 |||||||| || || |||||||||| || || |||| | ||||| | || |||||| Sbjct 827 GATCCTCTTACCTTTTTAAAGAAAATAGCTTCTTTATTCGATTTAGAGATTCAATACCGT 886 Query 1292 GTAGAAGTTGAGGGGAGTCAAATTGTCGGTTGGTTTGTTGATCTAGTTGAAAAGGTTGGG 1351 |||||||| | || || ||||| || |||| || ||| | || |||| || Sbjct 887 GTAGAAGTAGTCGGTTCACAGATTGTTGGCTGGTACGTGGATATGGTGAAAAAACGCGGT 946 Query 1352 CGTGTTACACGAAAAGAAGTTGAACT--AGGGAAAGATTTGATCAACGTAACACGTATTG 1409 | | | | | || ||||| |||| |||||| ||||| | || | |||||||| Sbjct 947 AGAGACATAGGCAAGGAAGT--AACTTTAGGGAAGGATTTAGTTGGTGTTAAACGTATTG 1004 Query 1410 AACATTCAAAAAATATTTGTACGGCCCTAGTTGGTTTTGCGCGCGGTGAAGACAATGAAG 1469 | ||||| | || ||||||| ||| |||| || || | | || |||| | Sbjct 1005 AGCATTCTAGGGATGTTTGTACTGCCTTAGTCGGATTCGTCCAGGGCGAAGGGGGTACCA 1064 Query 1470 TAATCACAATCGAAAAGATCAATAACGGATCGCCTTACATTGTTGATAATGAAGCGTTTC 1529 | || ||| | |||| || ||| | || | ||||| ||| ||||| || || | || Sbjct 1065 TTATTACAGTTGAAAGCATTAATGATGGTTTACCTTATATTACTGATAGCGATGCCTATC 1124 Query 1530 AGCGCTGGAGTGAGAATGGTCAACATAAATACGGTTTCTATCAACCAGAAACAGAAGGAG 1589 | ||||||| ||||||||| ||||||||| || ||||| ||||||||||||| | Sbjct 1125 AACGCTGGAACGAGAATGGTAAACATAAATTTGGCTTCTACACTCCAGAAACAGAAGAAC 1184 Query 1590 AAA--TTGAC-GCAAAACGTCTTATGACTCTTATGAAAACCGAAATGGAGAAAAGAAAGA 1646 ||| |||| |||| || || ||||||||||||||||| || | | ||| | | Sbjct 1185 AAAATATGACACCAAAGCGGCTCATGACTCTTATGAAAACAGAGTTCGCTAAACGCGTTA 1244 Query 1647 ATTCTTCAGTCGGATATGAAGTAGACGCGATTGACATTGCTGAAGTGTTTGGCCTACGTC 1706 || |||| || | || || ||||| || | || | || ||||| ||| || Sbjct 1245 ATACTTCTGTTGTTTACGATGTAGAAGCAGCAGCTATAGGGCGTGTATTTGGACTATCTC 1304 Query 1707 ATGAATTGA-TCATGAAGGGTGACACGATCGGCATTAAAGACACGGCGTTTACACCTGCA 1765 |||| | | | ||||| || || || || | |||||||| || | |||||||| | Sbjct 1305 ATGAGCTAATTAATGAA-GGAGATACAATTCGAATTAAAGATACTGGATTTACACCGAAA 1363 Query 1766 TTGTATTTAGAAGCGCGAGCGAT 1788 | ||||||||||| || || || Sbjct 1364 CTTTATTTAGAAGCACGGGCAAT 1386 >seq31478 Length=1036 Score = 84.2 bits (92), Expect = 5e-12 Identities = 181/270 (67%), Gaps = 3/270 (1%) Strand=Plus/Minus Query 6663 TTTCATGTTGCTGTAGATGATAAAGAAGCAATTCAATTAATCCCATTCAACCGCAATGCG 6722 |||||| |||| ||||||||||||||||| | ||| || || || | || || || Sbjct 919 TTTCATATTGCAGTAGATGATAAAGAAGCTGTACAAGGTATTCCTTTAGAACGTAACGCT 860 Query 6723 TGGCACGCTGGAGACGGTGCAAACGGACGCGGTAACCGCCATTCAATCGGCGTTGAAATC 6782 ||||| ||| ||||||| |||| ||||| || | || ||||| |||||||| Sbjct 859 TGGCATTGTGGTGACGGTG---GCGGAAATGGTAATCGTAAATCTATCGGAGTTGAAATT 803 Query 6783 TGTTATTCAAAATCTGGTGGCCCGCGTTATGAACAAGCTGTACGAAATGCAATCATTGTT 6842 || || || | ||||| || ||| | |||| | | |||||| || ||| Sbjct 802 TGCTACTCTTTAAGCGGTGGAGATCGATATTATAAAGCAGAAGATAATGCAGCTATCGTT 743 Query 6843 ATTAGACAGTTAATGGATCAATTTAACATTCCGATCGAACGCGTTAAAACACACCAAGAA 6902 | ||| |||||| | || | || ||||| || ||| ||||||||| | Sbjct 742 GTAGCACAATTAATGAAACAGTACAATATTCCAATTAGTAAAGTTCGCACACACCAATCA 683 Query 6903 CGAAACGGAAAATATTGTCCACATCGTATG 6932 | | ||||| |||||||| ||||||||| Sbjct 682 TGGAGTGGAAAGTATTGTCCTCATCGTATG 653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117948197814876