Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1029 89.7 4e-13 seq40 89.7 4e-13 seq680 87.8 2e-12 >seq1029 Length=71094 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| ||||| | ||| ||||||||| ||| | || ||||| || || || |||||| Sbjct 12380 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTTGCTGGAAAGCAGTTGGAA 12321 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | ||| | || ||||| |||||||||||||| || || ||||| |||| ||| Sbjct 12320 GATGGTCGAACCCTAGCTGATTACAACATTCAAAAAGAGTCAACACTGCATCTGGTTTTA 12261 Query 28767 AG 28768 || Sbjct 12260 AG 12259 >seq40 Length=1536145 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| ||||| | ||| |||||| || || || || ||||| || ||||| |||||| Sbjct 682123 GACAAGGAGGGGATACCCCCAGATCAGCAAAGGCTGATTTTTGCTGGGAAACAGTTGGAA 682182 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | |||| | || ||||| || ||||||||||| || ||||| ||| |||| || Sbjct 682183 GATGGTCGAACTCTAGCTGATTACAATATTCAAAAAGAGTCGACTCTTCACCTGGTTTTG 682242 Query 28767 AG 28768 || Sbjct 682243 AG 682244 >seq680 Length=135211 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| ||||| | ||| ||||||||| ||| | || || || || || || ||||| Sbjct 22490 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTCGCTGGAAAGCAGTTGGAG 22549 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | ||| |||| ||||| |||||||||||||| || || ||||| |||| ||| Sbjct 22550 GATGGTCGAACCTTGGCTGATTACAACATTCAAAAAGAGTCAACGCTGCATCTGGTTTTA 22609 Query 28767 AGA 28769 ||| Sbjct 22610 AGA 22612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424988386795143