Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq320 145 2e-29 seq6 116 1e-20 seq33 105 2e-17 seq39 104 7e-17 seq31 91.5 4e-13 seq10 86.0 2e-11 seq27 84.2 6e-11 >seq320 Length=344858 Score = 145 bits (160), Expect = 2e-29 Identities = 239/341 (70%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| | ||||||||| |||||| ||| | | || || Sbjct 266198 ATTTCTAACAGTACCATCATATTTGACCATAATGTCCTCCATAGCCTTCACAAGGCGCCG 266139 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||||||| ||||| ||| ||||| ||||| |||||||||| ||| | | |||||| Sbjct 266138 CTGAATATATCCAGTCTCAGAAGTTTTCACAGCAGTATCAATTAAACCTTCCCTACCACC 266079 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 |||||| |||||||| | || | |||| || ||| | || ||||| |||| || || Sbjct 266078 CATAGCGTGGAAGAAGAATTCCTGCGGTGTTAACCCACGAAGGTAGGAGTTCTCCACAAA 266019 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775 |||||| || || | ||| || || ||||| || | || | | || | | Sbjct 266018 ACCACGACTTTCAGGTCCGTAGTCATCTTTCGTGAAGTGAGGTAATGTTC-GATCAATGA 265960 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | || || || || || || || ||||| ||||||||||||| || | | ||||||| Sbjct 265959 -ACCCATAAGGAATCCGTTTGCCCTCAACATTCTGCTGTCCCACACAAGCAGTCATCTGA 265901 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||||| || | | ||| ||||| || || || | ||||| Sbjct 265900 GAAATGTTAATAAAACTACCCTTTGATCCTGCGGTAACCAT 265860 Score = 84.2 bits (92), Expect = 6e-11 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889 |||||||||| | || || || ||| || |||||||||| ||||||||||||| || Sbjct 266924 GGGAACACCAAGAGTAACATTCT--TTGCACT-AACACCAGCATAGTGGAAAGTATTAAG 266868 Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCC 301949 || | ||||||| ||| ||||| || ||| || || || ||||| ||| || || Sbjct 266867 GGTCATCTGAGTAGCTGGTTCACCGATGGATTGGGCAGCTATGCAACCAATCATCTCACC 266808 Query 301950 TGGTGCTACAATAGACT 301966 ||||||||| | |||| Sbjct 266807 TGGTGCTACCAGTGACT 266791 >seq6 Length=2872082 Score = 116 bits (128), Expect = 1e-20 Identities = 258/382 (68%), Gaps = 5/382 (1%) Strand=Plus/Minus Query 288963 TTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCt 289022 |||||| ||||| ||| | |||||||| ||||| | ||| | || | || || Sbjct 792105 TTGATTTAGTGTGCTTTCACGCTCATCATTGGAACC-CGAGAAGCCTCC--ACGGCCTCT 792049 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 | | ||||| |||||||| || ||||| ||||| | | || | | |||| || Sbjct 792048 TGCTCGACCAATTGCATCAATCTCATCAATAAAAATTATGCTAGGTGCACACTGTCGGGC 791989 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 |||||| || | || || | ||| | ||||| ||||||| ||||||| | ||| || Sbjct 791988 TTCTGCAAACAAGTTCCTCACTCTGGAAGGTCCAACACCAACAAACATTTCCATAAAATC 791929 Query 289143 AGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 ||| | || | | || | ||| | |||| | ||| || ||| |||| | || ||| Sbjct 791928 TGAACCAGAAA-TAGACAAGAAAGGTACACCAGATTCCCCAGCTGTTGCCTTTGCAAGAT 791870 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAG 289261 |||| || ||||| ||||| || || | | || | || | || | |||||| || Sbjct 791869 GTGTTTTCCCTGTACCAGGAGGGCCTACAAGAAGGGCACCTCTGGGAATTTTTGCTCCTA 791810 Query 289262 CAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTG 289321 || |||||||| || | ||||| || | |||| |||| || ||| | ||| | Sbjct 791809 GGTCCTCATATTTCTTGGGATTTTTTAAGAAGTGCACAAATTCCATAATTTCTTGTTTGG 791750 Query 289322 CCTCATCACATCCTGCTACATC 289343 |||||||||| || |||||||| Sbjct 791749 CCTCATCACAGCCAGCTACATC 791728 >seq33 Length=1606457 Score = 105 bits (116), Expect = 2e-17 Identities = 158/224 (71%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 156045 AAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 ||| |||| || |||||||||||| ||||| ||||| |||||||| | ||| || || Sbjct 1148389 AAATTACCTTTTCTCTTGCCACCCCCTTGATCAACATAACGAGCAGTATCATTAAAAACC 1148448 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | | ||| |||| ||| ||||| || || ||||| || || || |||| ||||| | Sbjct 1148449 CTCAACATTGGAACAATGCCATTAGATGTCCCATTTGTCCCACGGATATAACTACCAGTT 1148508 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCAT 156221 | |||| ||| ||| | || ||||| || || | |||| || ||| ||| Sbjct 1148509 GCACGAATATTGTGAGCAGATATGCCAATTCCTCCAGCAGATTTGCTTATAACAGCACAT 1148568 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||||| ||||| | || || ||||| |||||||| ||| Sbjct 1148569 TCCTTTAAAGTATCATATATTCCCTCAATGCTATCATCTTTCAT 1148612 >seq39 Length=1554931 Score = 104 bits (114), Expect = 7e-17 Identities = 284/424 (67%), Gaps = 11/424 (3%) Strand=Plus/Plus Query 288932 TTTGCTT-AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCA 288990 ||| ||| ||| |||||||| || || | |||||||| ||||| || || |||||| Sbjct 271860 TTTCCTTCAAACCCATCCATTTCAGTCAACAGCTGATTAAGGGTTTGCTCTCTCTCATCA 271919 Query 288991 TTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCA 289050 || ||||| ||| || || ||| || || |||||||||||||| || || Sbjct 271920 TTCCCACCTCC--AATT--CCTGTTC-CTCTTTGCCTT-CCAACAGCATCAATCTCATCC 271973 Query 289051 ATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGAT 289110 | || || | || || | ||| | | | || | ||| | || | || || || Sbjct 271974 ACAAAGATGATGCAAGGTGCATTCTCTTTGGCCTTCTTAAAAAGATCACGGACTCGTGAA 272033 Query 289111 GCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTAC 289169 || || | ||||||| |||| |||||||| ||||| | || | |||| | |||| || Sbjct 272034 GCACCTACACCAACAAACATCTCTACAAACTCAGATCCAGA-AATTGAGAAAAATGGAAC 272092 Query 289170 ATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTC 289229 | |||||| || || | |||| | || || | || || || ||||| || || || Sbjct 272093 ACCTGCTTCACCAGCAATTGCCTTAGCAAGCAACGTTTTCCCAGTTCCTGGAGGACCGAT 272152 Query 289230 TAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAA 289289 | ||||| |||||||| | | ||| || | | || | |||| || |||| || Sbjct 272153 AAGAAGAACACCCTTTGGAATTCGTGCACCTACTGCAGTAAACCTCTCTGGTTTCTTCAA 272212 Query 289290 AAATTCTACAATTTCC-TCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAA 289348 || || |||| |||| | ||| || | ||||| ||||| ||| || |||||| ||| Sbjct 272213 GAACTCCACAACTTCCATGAAG-TCCTGCTTTGCTTCATCTACTCCAGCAACATCATCAA 272271 Query 289349 AAGT 289352 | || Sbjct 272272 ATGT 272275 >seq31 Length=1629419 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||||||||| || | |||||||| ||||| | ||| ||||||| ||| ||||||||| Sbjct 516044 TTGCAAATAGATCCCGAACACGGGAGGCTCCCATACCCACATACAATTCGACAAATTCAC 516103 Query 289145 AAGCGGAT--ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 || || |||| || || | || | |||||| || ||||| || | || | ||| Sbjct 516104 TTGCAGAACAACTT--ATAAAGGGAACTTCTGCTTCCCCAGCTACAGCTTTTGCTAAAAG 516161 Query 289203 TGTCTTACCTGTTCCAGG 289220 |||||||||||||||||| Sbjct 516162 TGTCTTACCTGTTCCAGG 516179 >seq10 Length=2616268 Score = 86.0 bits (94), Expect = 2e-11 Identities = 255/383 (67%), Gaps = 9/383 (2%) Strand=Plus/Plus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023 ||||| || || ||| | ||||||||||| ||| | ||| ||| | || ||| Sbjct 2172921 TGATTTAGAGTACTTTCACGTTCATCATTTGCACC-CGAGAA--ACCTCCACGGCCTCTT 2172977 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC- 289082 | ||||| |||||||| |||||||| || || | || || | | || || || Sbjct 2172978 GCTCGACCAATTGCATCAATCTCGTCAATAAATATTATACTAGGTGCACACTGCCTAGCT 2173037 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 ||| || | ||| || || | ||||| ||||| ||||||| ||||||| | ||| || Sbjct 2173038 TCTTGGAACAAGTTC-CTCACCCTGGATGGTCCAACACCAACAAACATTTCCATAAAATC 2173096 Query 289143 AGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 || | || | | || | || | |||| | ||| || || ||| | || |||| Sbjct 2173097 CGAGCCAGA-AATAGACAAAAAAGGCACATCAGATTCACCCGCAGTTGCTTTTGCAAGAA 2173155 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCA 289260 |||| || ||||| ||||| || || | | ||| | || || || | ||| || |||| Sbjct 2173156 GTGTTTTTCCTGTGCCAGGAGGGCCTACAAGAAGAGCACCTTTGGGAATTTTAGCTCCCA 2173215 Query 289261 GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 | || ||| |||| || | |||| || | |||| ||| || ||| | ||| Sbjct 2173216 AC-TCCTCATACTTCTTGGGATTTTTTAGGAAATGCACAAACTCCATAATTTCTTGTTTG 2173274 Query 289321 GCCTCATCACATCCTGCTACATC 289343 || |||||||| || || ||||| Sbjct 2173275 GCTTCATCACAGCCAGCAACATC 2173297 >seq27 Length=1763170 Score = 84.2 bits (92), Expect = 6e-11 Identities = 212/317 (67%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| |||||||| || ||||| ||||| | | || | | |||| || ||| Sbjct 954089 ACCAATTGCATCAATCTCATCAATAAAAATTATGCTAGGTGCACACTGTCGGGCTTCTGC 954148 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| | | || || | || | ||||| ||| ||| ||||||| | ||| || ||| | Sbjct 954149 AAACAGGTTCCTCACCCTCGAAGGTCCAACACCGACAAACATTTCCATAAACTCTGAACC 954208 Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 || | | || | || | |||| | || || || ||| | || |||||||| | Sbjct 954209 AGAAA-TAGACAAAAAAGGTACACCAGACTCTCCAGCAGTTGCTTTTGCAAGAAGTGTTT 954267 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266 | ||||| ||||| || || | | ||| | || || || | ||| || ||||| | Sbjct 954268 TCCCTGTGCCAGGAGGGCCTACAAGAAGAGCACCTTTGGGAATTTTCGCTCCCAGTTC-C 954326 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | ||| |||| || | | ||| || | |||| |||| || ||| | ||| |||||| Sbjct 954327 TCATACTTCTTGGGATTTTGTAAGAAGTGCACAAATTCCATAATTTCTTGTTTAGCCTCA 954386 Query 289327 TCACATCCTGCTACATC 289343 ||||| || |||||||| Sbjct 954387 TCACAGCCAGCTACATC 954403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470303009080829